barSeed - Barley Seed Development Database

Probe CUST_4528_PI390587928

Source Contig U35_38912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4528_PI390587928	Hv_44K_v2	CATCTCACAACAAGCAGCAACCGCTTGATGGGAACATGTTTATTAACTATATCGTCAGGG	136	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364273	3533	6e-24	2006 - 2064	100	59 / 59	plus	ABC10694
MLOC	MLOC_4898.1	3125	6e-24	1534 - 1592	100	59 / 59	plus	ABC10694
JLOC1	JLOC1_3105.1	3185	3e-24	1530 - 1588	100	59 / 59	plus
Harvest21	ABC34891	236	3e-25	137 - 196	100	60 / 60	plus
Harvest21	ABC10694	1623	1e-24	43 - 101	100	59 / 59	plus	ABC10694
Harvest35	U35_38912	236	3e-25	137 - 196	100	60 / 60	plus
Harvest35	U35_4641	1623	1e-24	43 - 101	100	59 / 59	plus

Contig Sequence (236 bp)

>U35_38912 236 Hv_44K_v2
CAGGCTCGGCTCCTCCGAGGAGGTCCTGGCAATATCAGTATCACTCCATCTAACTGCCAG
TGGAACCTCATGGGGAAGAAACTGGTAGAAGGCAAAGCACTCCAGTGTTGGGGCATTGTC
GACTTCAGTGCACGGCCATCTCACAACAAGCAGCAACCGCTTGATGGGAACATGTTTATT
AACTATATCGTCAGGGNNAAGTGGCCCTTGGTGACCCCTTGGCATTCAGATGAACA

Homology of Contig U35_38912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None