barSeed - Barley Seed Development Database

Probe CUST_4522_PI390587928

Source Contig U35_14960

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4522_PI390587928	Hv_44K_v2	TGGAAGCCGGCAATGTAACTTCCCTGTTGATAATATGTCAACAAGCACTTAAGTAAAAAA	460	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.268	4.636	1.341	0.753	0.260	0.487
Raw	1816.669	2232.203	531.052	505.611	55.602	117.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72691.2	1112	9e-22	1045 - 1099	100	55 / 55	plus	ABC02411 ABC02412 ABC34519
JLOC1	JLOC1_48362.1	2938	5e-22	948 - 1002	100	55 / 55	plus
Harvest21	ABC02411	579	3e-25	509 - 568	100	60 / 60	plus	ABC02411
Harvest21	ABC02412	836	2e-22	754 - 808	100	55 / 55	plus	ABC02412
Harvest21	ABC34519	385	8e-21	31 - 85	98	54 / 55	minus	ABC34519
Harvest35	U35_14960	531	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_14958	877	2e-22	753 - 807	100	55 / 55	plus

Contig Sequence (531 bp)

>U35_14960 531 Hv_44K_v2
GCACGAGGCAAGGAGTCGGCCCAGGACATCCTCAACCTCAAGCCGCTCATCGACAAGAAG
CAATGGCCGTACGTCATGAACGACCTCCGCCTCAGGGCCTCCTACCTGCGCTACGACCTC
AAGACCGTCATCTCCTCCAAGACCACCAAGGAGGAGAAGAAGGACCTCAAGGACCTCACC
GGCAAGCTCTTCGCCACCCTCGACGGGGTAACAAACCATCATCTCGCAGTTTCAAACCTG
AACATTTTCGCAAGAAGAATTGCAGGACTAACAGGTGTGAGCTTCTCCGTTTTTTCTTTC
TTGCAGCTTGACCACGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGC
GAGACCAAGACTGTTCTCGGCGATGTCCTCGCCAAGCTAGGCTAGATGGATCCACATAAT
GGCCGTGTTGCTTTCAGGCCTTTTATGTTTTGTTCATATTTGGAAGCCGGCAATGTAACT
TCCCTGTTGATAATATGTCAACAAGCACTTAAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None