barSeed - Barley Seed Development Database

Probe CUST_4521_PI390587928

Source Contig U35_14961

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4521_PI390587928	Hv_44K_v2	TTCCCTTCCATCTCTTCTTAATTAGGTGTGTGTGTCGAAAGTACCTAAAGTTTGTATCTA	980	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.348	1.991	1.466	0.810	0.376	0.378
Raw	78.387	76.651	46.976	42.237	5.703	5.896

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02340	1066	3e-25	958 - 1017	100	60 / 60	plus	ABC02340
Harvest35	U35_14961	1089	3e-25	981 - 1040	100	60 / 60	plus

Contig Sequence (1089 bp)

>U35_14961 1089 Hv_44K_v2
TGGCCTCCGGCGCCCCCGACTCCCACAGCCTCCAACCCCTCCCCCAACCTCCAACCCACC
GGCGGCGCCGCTGCGCGAGGAGAAGAGTCGAAGAAGATGGTGAAGTTCCTCAAGCCCGGG
AAGGCGGTGATCCTGCTGCAGGGCAGGTACGCGGGGAAGAAGGCGGTGATCGTCCGCGTC
TTCGAGGAGGGCACCCGCGACCGCCCCTACGGCCACTGCCTCGTCGCCGGCCTGGCGAAG
TACCCCAAGAAGGTGATCCGCAAGGACTCGGCGAAGAAGACGGCCAAGAAGTCGCGCGTC
AAGGTCTTCCTCAAGCTCGTCAACTTCACCCACCTCATGCCCACCCGCTACACCCTCGAC
GTCGACCTCAAGGAGGTGGCCTCCGGCGCCCCCGACTCCCTCACCACCAAGGACAAGAAG
CTCACCGCCGCCAAGTCCGCCAAGGCCAAGCTCGAGGAGAGGTTCAAGACCGGCAAGAAC
AGGTGGTTCTTCACCAAGCTCCGCTTCTAGGTTCTTCGTCCGTCCGCGCCATTACTACCC
CGAACCCTTTACATTTTTAGTCGCTCGTTATCGGAAACTGTTGCTGCGCTCAAGATTTCC
TGTTTTGGCTTTGGTATTGCCCGTAAAGACTATGTTTTTAGATTGGATCTTATGAGATAT
GATGGTGGTTCATGTGTTGAATCATGAGATCTGCTTGGAATTTTCCTTCAGTATTTTTAC
AGTGTTATGATGATGATGATGCTTGCCTAAAAAAAAAAAAAAAAATGGTCTAGATGCTCA
ATTATATGTTATGATGCATTTCATCTCTCTGTTAGTGTGTCTTATATTTCTTACATGTGA
GTCTCAAGCAGCATCAGACTTAGCAGTTCGGAGCAAACATTTGTGTTGGTAAATTATTTT
ATGATTCGTCTACAGTTTTCGTGCTTATTGTGGTGTGATGGATACCGTACGTCTTCGTGT
GTGTAAAATTTGGCAGCCCCTTCCCTTCCATCTCTTCTTAATTAGGTGTGTGTGTCGAAA
GTACCTAAAGTTTGTATCTATTCAAAAATATATATTGTTATGTTATTAATAATAAAAAAA
AAAAAAAAA

Homology of Contig U35_14961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18380.1	138	2e-70	protein\|60S ribosomal protein L27-3, putative, expressed
Brachypodium v1_2	Bradi1g30210.1	138	9e-72
Arabidopsis v10	AT4G15000.1	135	2e-59	Ribosomal L27e protein family \| chr4:8571896-8572303 FORWARD LENGTH=135