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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4517_PI390587928Hv_44K_v2CGCCGAGAAGGCCAAGGAGTCTGTCGGCATCCGCCCCGGCAAGGGTAAGATGCGCAACCG457GeneList: orange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8140.8362.0172.0400.8870.752
Raw 1434.1102244.8634896.5337741.9071214.6131115.544



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36628014882e-24607 - 66610060 / 60plus ABC02268 ABC02269 ABC36985
MLOCMLOC_48778.12122e-2472 - 13110060 / 60plus ABC02268 ABC02269
JLOC1JLOC1_31290.12128e-2572 - 13110060 / 60plus
Harvest21ABC274073333e-25140 - 19910060 / 60plus
Harvest21ABC022715173e-25458 - 51710060 / 60plus
Harvest21ABC0226815813e-25593 - 65210060 / 60plusABC02268
Harvest21ABC0227016436e-22590 - 6499758 / 60plus
Harvest21ABC0226910206e-2281 - 1409758 / 60plusABC02269
Harvest35U35_1496716563e-25606 - 66510060 / 60plus
Harvest35U35_149665173e-25458 - 51710060 / 60plus
Harvest35U35_1496515236e-22595 - 6549758 / 60plus



Contig Sequence (517 bp)

>U35_14966 517 Hv_44K_v2
CGCAGCCGCCGCCGCCGCCGCCATGGCCACCACCGCGCGCCCGCTCGTCTCCGTCAAGGC
CCTGGAGGGGGACATGGCCACGGACGCGGCCGGCGTCCCGATGCCGCACGTCATGACGGC
GCCGATCCGCCCCGACGTCATCACCTTCGTCCACAGGCTTGTCTCCTGCAACAGCCGCCA
GCCCTACGCCGTCTCCCGCAAGGCCGGTCACCAGACCTCGGCCGAGTCCTGGGGCACGGG
TCGCGCCGTGTCGCGTATCCCGCGTCAACATCCGCCTCCGTCGCGTCGCCGTCGCCTCCG
CCCTCGCCGCCACCGCCGTCCCGGCCATTGTCACCGCCCGCGGCCACCGCATCGAGGGCG
TCCCCGAGTTCCCGCTCGTCGTCTCCGACTCGGCCGAGGGCATCGAGAAGACCTCCCAGG
CCATCAAGGTGCTCGAGCAGCTGGGCGCCTTCGCTGACGCCGAGAAGGCCAAGGAGTCTG
TCGGCATCCGCCCCGGCAAGGGTAAGATGCGCAACCG



Homology of Contig U35_14966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None