barSeed - Barley Seed Development Database

Probe CUST_4516_PI390587928

Source Contig U35_14967

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4516_PI390587928	Hv_44K_v2	GTCCGGTTGCTAGTTCAGATTCTGAGTCCTGTTTTTCATATACTCTTATGAATGCGAAAT	1470	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.391	1.250	1.173	0.946	0.486	0.384
Raw	65614.700	89497.800	76625.300	93977.967	17474.133	15005.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02268	1581	3e-25	1458 - 1517	100	60 / 60	plus	ABC02268
Harvest21	ABC50129	627	1e-24	6 - 64	100	59 / 59	minus
Harvest35	U35_14967	1656	3e-25	1471 - 1530	100	60 / 60	plus
Harvest35	U35_48401	627	1e-24	6 - 64	100	59 / 59	minus

Contig Sequence (1656 bp)

>U35_14967 1656 Hv_44K_v2
AGCCTCTGCCCCCGCCGCCGCACCTCAAGCCTCTCCCCCGCAGCCGCCGCCGCCGCCGCC
ATGGCCACCACCGCGCGCCCGCTCGTCTCCGTCAAGGCCCTGGAGGGGGACATGGCCACG
GACGCGGCCGGCGTCCCGATGCCGCACGTCATGACGGCGCCGATCCGCCCCGACGTCATC
ACCTTCGTCCACAGGCTTGTCTCCTGCAACAGCCGCCAGCCCTACGCCGTCTCCCGCAAG
GCCGGTCACCAGACCTCGGCCGAGTCCTGGGGCACGGGTCGCGCCGTGTCGCGTATCCCG
CGTGTCGGCGGCGGTGGAACCCACCGCGCCGGGCAGGGAGCCTTCGGCAACATGTGCCGT
GGCGGACGCATGTTCGCGCCCACCCGGATCTGGCGCAAGTGGCACCGCCGCGTCAACATC
CGCCTCCGTCGCGTCGCCGTCGCCTCCGCCCTCGCCGCCACCGCCGTCCCGGCCATTGTC
ACCGCCCGCGGCCACCGCATCGAGGGCGTCCCCGAGTTCCCGCTCGTCGTCTCCGACTCG
GCCGAGGGCATCGAGAAGACCTCCCAGGCCATCAAGGTGCTCGAGCAGCTGGGCGCCTTC
GCTGACGCCGAGAAGGCCAAGGAGTCTGTCGGCATCCGCCCCGGCAAGGGTAAGATGCGC
AACCGCAGGTACATCAACCGCAAGGGACCCCTCATCGTCTACGGCACCGAGGGCTCCAAG
ATCGTCAAGGCCTTCCGCAACCTCCCAGGTGTGGATGTTGCCAACGTCGAGCGCCTCAAC
CTGCTCGACCTTGCCCCTGGTGGCCACCTTGGCCGGTTTGTGATCTGGACCGAGTCTGCC
TTCAAGAAGCTGGACGAGGTGTACGGCTCCTTTGAGGCGTCTTCCTCCAAGAAGAAGGGC
TTCGTCCTCCCCAGGCCTAAGATGACCAACGCTGACCTTGGCCGCCTCATCAACTCTGAC
GAGGTCCAGTCTGTTGTGAAGCCCATCAACAAGGAGGTTAAGCGCAGGGAGGCCAGGAAG
AACCCTCTGAAGAATGCTGCTGCCGTGCTCAAGCTCAACCCCTACTTTGGGACTGCCCGC
AGGATGGCAGTTCTTGCTGAGGCTGCCCGGGTCAAGGCCAGGAAGGACAAGATTAACTCC
AAGAGGACCAAGCTCAGCGCGGAGGAGGCATCTAAGATCAAGGCTGCAGGGAAGGCGTGG
TACCAGACCATGATTTCTGACAGCGACTACACCGAGTTCGACGTCTTCTCCAAGTGGCTC
GGCGTCAGCCAGTGATCATCTTGTTGAAGTAGTAGCAGTTTTATCGTCCTACCTTTGAGA
CCCTAAAGCCTTTGAGACCCTAAAGTATGATTTTGTCATTGTGTCGTGTTATGGAGTCTG
AGACATCGAATGCTGTTTTGGTAGCTGGTTATCTCGAGTGTTTTATCTGTGGATGCCTTT
TTCGAGACATGTTCTGTGGCATACTTTATCGTCCGGTTGCTAGTTCAGATTCTGAGTCCT
GTTTTTCATATACTCTTATGAATGCGAAATAATTTTCGTCATGGTTAAAAAAAAAAAAAA
AAATTTTGGGGTCCGTCTATCTCACATCAAAAAAAAAAAAAACCTAGCATCTAACAGGCC
TGTTTGTTTGTCGCATGTCTGTTACTTTGTCACTGC

Homology of Contig U35_14967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g58204.1	405	protein\|ribosomal protein L4, putative, expressed
Brachypodium v1_2	Bradi1g05510.1	405
Arabidopsis v10	AT3G09630.1	406	Ribosomal protein L4/L1 family \| chr3:2953813-2955444 FORWARD LENGTH=406