- Probe CUST_4512_PI390587928
- Source Contig U35_26941
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4512_PI390587928 | Hv_44K_v2 | ATGAAAAGGTGTACGACAAGTACAATGTGCGGAGAACTGACCGGATCTCTTCAGTACTGA | 602 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.464 | 2.526 | 4.112 | 2.101 | 0.545 | 0.459 |
| Raw | 9.337 | 89.016 | 121.668 | 96.688 | 9.087 | 7.896 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57705.3 | 3712 | 2e-24 | 428 - 487 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_57705.1 | 3889 | 2e-24 | 550 - 609 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_57705.2 | 3774 | 2e-24 | 469 - 528 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_37435.4 | 3882 | 8e-25 | 3281 - 3340 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37435.3 | 3847 | 8e-25 | 3246 - 3305 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37435.2 | 3740 | 8e-25 | 3139 - 3198 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37435.1 | 3763 | 8e-25 | 3162 - 3221 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34228 | 672 | 2e-22 | 603 - 662 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_26941 | 747 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus |
Contig Sequence (747 bp)
>U35_26941 747 Hv_44K_v2 GAAAGAGGTTATAAAATCACTAACGGCGCAGGTAAAAGAAATGGCCGAGAGGCTTCCTCC AGGAGACTCCGACGTGAAGCCACCACGGCTCGCGTATCTACCTGGTGGTGTGGCTTCTCC TGAAATGGGAAGAGAAGGCCAGAAGAGATATGAGCCAGTATCCATTCATTATTCTCAAAC ACCGACTTCTGTCACGTCTGCTTGGTCTAACGGGCTCCCTCCCCAAGCCCATCAAATAGG TAAACCCGGTGATAACACGGTGGTTCCACACGATAACATGTTCGAACACTTCAACAAAAG CAGAGATTTTCCAGCCACACACCAGAGGACGAACAGTGGGATGGCGGGGTATCGTCCGAG ATCAGAGGATTTTGACCGGCGGGAAACGGAAAGGTTCCAGATAAACCTTCAAGGCTGGAA CACGAGAGGCTCCCCCGGTTCACCCAGTAATCAGGTTGAGTCTGAGTGGATAGAACAATT TGAACCTGGGGTGTACCTGACATTGGTTTCTCTCCATGATGGAACCAAAGAGCTGAAAAG GGTGCGGTTCAGTCGGAGAAGATTCGCAGAACATCAAGCGGAGTCGTGGTGGAGCGACAA CCATGAAAAGGTGTACGACAAGTACAATGTGCGGAGAACTGACCGGATCTCTTCAGTACT GACATCATAGCGTCCGCGCGCACGTNTTGCTAGACGCTCCAGACGGGCCGCCCGAACAGA AGAAGCCGGTGCGGCGAGTGTGTTGCA
Homology of Contig U35_26941 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g58960.1 | 1058 | 3e-103 | protein|regulator of chromosome condensation, putative, expressed |
| Brachypodium v1_2 | Bradi5g26867.1 | 1069 | 1e-121 | |
| Arabidopsis v10 | None |