barSeed - Barley Seed Development Database

Probe CUST_4511_PI390587928

Source Contig U35_26942

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4511_PI390587928	Hv_44K_v2	CCGCCGGCCAGAGGTTGCCTCCACTATCAACAGATCCAAAGAGGTGCGAGGCTGCATTTG	284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65546.2	2334	2e-24	310 - 369	100	60 / 60	plus	ABC09613 ABC11375 ABC11376
JLOC1	JLOC1_43134.2	2069	8e-25	267 - 326	100	60 / 60	plus
JLOC1	JLOC1_43134.3	2216	6e-21	398 - 455	97	58 / 60	plus
Harvest35	U35_26942	344	3e-25	285 - 344	100	60 / 60	plus

Contig Sequence (344 bp)

>U35_26942 344 Hv_44K_v2
GCGCCGCACACGTACGTACACACCCAACTCCTCTCTTCTCCTCTCAGCCAGGCAGACGCG
GTCCCCGCATTGCATTGACATGGTCTCGTCTTGCCTCGCCTCGCCGGCCACCGCGCGCGG
CGGCTCTGCTCTACGCCTACAGCTCCAGCCGAGGGGGTGCCGCGTCACGTGCTTGGCCGA
CGCGGGGGGAGCCGGGAGTGGCGGCCGCGTCAAGGCCGTGGGAGGGTTCGCGTGCGGCTT
GCTCGCAGCCTGGGCCGTCGCGTCAGCCCCCAGCCCGGTCTTCGCCGCCGGCCAGAGGTT
GCCTCCACTATCAACAGATCCAAAGAGGTGCGAGGCTGCATTTG

Homology of Contig U35_26942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None