barSeed - Barley Seed Development Database

Probe CUST_450_PI415269222

Source Contig TA53333_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_450_PI415269222	Hv_44K_v2	AACGACGGCATGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAACCTGCCGATGCTG	455	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.196	1.804	3.198	0.971	0.369	0.623
Raw	125.077	310.042	457.468	219.298	31.462	54.654

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367329	1610	2e-24	473 - 532	100	60 / 60	plus	None
MLOC	AK370407	4270	2e-24	2535 - 2594	100	60 / 60	plus	ABC18351
Harvest21	ABC10003	817	3e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_18772	1394	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (757 bp)

>TA53333_4513 757 Hv_44K_v2
CGCCCTGCAAATAAAACCCACGTGTCTGCCCTAACCATACCGGCCAGCGTACCATCATAG
TCAGAGCAACGCTCTCCGCACTCGCTACAATGGCGACACGGGCACACCGAGCTCCCATCT
CCCTCCTCGTCCTACTGCTCGCCTCAGTCACCGGTGTGGCGTCCAAGTCGTTCGCCATCA
CCAACAACTGCGAGTACACGGTGTGGCCGGGGATCCTCTCCAGCGCGGGCTCTCCGGGCA
TGGACAGCACCGGCTTCGCGCTGGCCCCGGGGGAGTCGAGGACCATGCCGGTGCCGGCGG
GGTGGTCGGGGCGGCTCTGGGGCCGCACGCTCTGCACCACGGACCCCGCCGGCAAGTTCG
CGTGCGTGACCGGCGACTGCGGCTCCGGGCGGCAGGACTGCGCGGGCGGCGGGGCGGCGC
CGCCCGCCACGCTGGCGGAGTTCACCATGGACGGCAACGACGGCATGGACTTCTACGACG
TGAGCCTGGTGGACGGGTACAACCTGCCGATGCTGGTGGCGCCGGAGCAGCAGGGCGCCG
CCGCGGCGGCGGGCGGCAACTGCGCGCCGACGGGGTGCGTGGTGGACCTGAACGGCGCGT
GCCCGGGCGACCTGCGCGTGCCGTCGTCGACGGGCGGCGTGGCGTGCAAGAGCGCGTGCG
AGGCGTTCGGGACGGCGCAGTACTGTTGCAGCGGCGAGTACGGCAGCCCCGGGACGTGCC
GCCCGTCGGCCTACTCGCAGTTCTTCAAGAACGCGTG

Homology of Contig TA53333_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g05660.1	326	1e-91	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi1g68340.1	330	8e-82
Arabidopsis v10	AT4G36010.1	301	4e-88	Pathogenesis-related thaumatin superfamily protein \| chr4:17039472-17040976 REVERSE LENGTH=301