barSeed - Barley Seed Development Database

Probe CUST_4509_PI390587928

Source Contig U35_26945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4509_PI390587928	Hv_44K_v2	TGGTCCTCCATTGCAACATTGCTCCTCCACATTCCTGTTTGCTGGTTATTAGTGTTCAAG	446	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81297.2	1993	2e-24	1650 - 1709	100	60 / 60	minus	ABC17338
MLOC	MLOC_81297.3	2308	2e-24	1969 - 2028	100	60 / 60	minus	ABC17338
MLOC	MLOC_81297.1	1773	2e-24	1218 - 1277	100	60 / 60	minus	ABC17338
JLOC1	JLOC1_54090.2	1567	8e-25	299 - 358	100	60 / 60	plus
JLOC1	JLOC1_54090.1	2018	8e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC22894	504	4e-24	447 - 504	100	58 / 58	plus
Harvest35	U35_26945	506	3e-25	447 - 506	100	60 / 60	plus

Contig Sequence (506 bp)

>U35_26945 506 Hv_44K_v2
CGCTGCCGATGGCGGCCGTGAGCGTGGCGCAGTACGCCGTGCAGGTGGCCTCCAACATGA
TGGTCGGCCACCTCCCCGGGGGCGTCCTCGCGCTCTCCGCCTCCGCCATCGCCACCTCCC
TCGCCTCCGTCTCCGGATTCAGCCTCCTCATTGGAATGGCAAGCGGCTTAGAAACTCTGT
GTGGTCAAGCTTACGGGGCTGAGCAGTATGGCAGATTGGGAGTGCAAACTTACAGAGCTA
TGGTCACCCTGACGGCTGTCAGCATTCCAATCTCACTTCTCTGGGTATTCATGGGGAAAC
TCCTGACCCTCATAGGCCAGGACCCGGTGATCTCGCATGAAGCCGGAAGATACATAATGT
GGTTGATTCCGGCCCTCTTTGCATATGCTGTCAGCCAGCCCCTAACAAAGTTCTTACAGT
CTCAGAGTCTGATAATCCCTATGCTTTGGTCCTCCATTGCAACATTGCTCCTCCACATTC
CTGTTTGCTGGTTATTAGTGTTCAAG

Homology of Contig U35_26945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48040.4	307	3e-77	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi2g17260.2	421	9e-79
Arabidopsis v10	None