- Probe CUST_4501_PI390587928
- Source Contig U35_38925
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_4501_PI390587928 | Hv_44K_v2 | GAGAGACCGGTTGTATACCAAACATTTCTTCTGATTAACAAAGATTATCCGAGATCAAAA | 587 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_39717.1 | 397 | 3e-22 | 326 - 381 | 100 | 56 / 56 | plus | ABC03448 ABC03449 ABC03452 |
JLOC1 | JLOC1_25910.1 | 551 | 1e-22 | 326 - 381 | 100 | 56 / 56 | plus | |
Harvest21 | ABC34912 | 650 | 3e-25 | 588 - 647 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03447 | 834 | 3e-25 | 764 - 823 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03449 | 574 | 1e-23 | 15 - 75 | 98 | 60 / 61 | minus | ABC03449 |
Harvest35 | U35_38925 | 650 | 3e-25 | 588 - 647 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15542 | 836 | 3e-25 | 764 - 823 | 100 | 60 / 60 | plus |
Contig Sequence (650 bp)
>U35_38925 650 Hv_44K_v2 GGCAAAGAGCAACAGCACAGCAAGAGAAAGAATTATTACATCCATAGACAGCAGCTCATT GTCTTACCGGAAGCCGAGGAACTTGCAACCAGCCATGGGCAGATCTGCCGGAGCTCCTCA GCCGCGCCAGGAAGACGAGGACCTGTTCGAGACCTCCTCCTCCTTCTCCTGCGACTCCGA CGACGAGGCACGGTTCTCGGACGGCGAGGACCAGTTCGTGCCGGCCTCCCCGCCGGCGCG CAGGCTGGTTTCAGAGGGCGTCTACGATCTGTCGTCGATGAAGGCAGAGCTCTCCGTCAA GAAAGGGGGGTTGTCCAAGTACTACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCGGA GGTGAGGTGCCTGGAGGACCTGCCCAAGAAGAGACCCTACAACAAGAAGATGAAGCCATG CCGGAGCCACGTCGAGATCGACGGTGACCAGAGAGCCTGCCCCGCGCCTCTTCTTTGTTC CTCGAGGATGAGGATTTTTCTTGGCGGGTCTATTAGCTTGTCAAATGTAAAGAGGCTTTT GCATCCATGTTGTTCGGGAAGACATTGATTGATTCAGTGTGTAAATAGAGAGACCGGTTG TATACCAAACATTTCTTCTGATTAACAAAGATTATCCGAGATCAAAAAAA
Homology of Contig U35_38925 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |