barSeed - Barley Seed Development Database

Probe CUST_4498_PI390587928

Source Contig U35_38928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4498_PI390587928	Hv_44K_v2	ATGAGGAATTGTTGGATGAGAGTGGGAATGATACCATAACTGATCGCACTAGGGTTGGAA	161	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10587.1	1231	2e-24	666 - 725	100	60 / 60	minus	None
MLOC	MLOC_10587.2	1133	2e-24	542 - 601	100	60 / 60	minus	None
JLOC1	JLOC1_6934.1	1258	8e-25	475 - 534	100	60 / 60	plus
Harvest21	ABC34916	656	3e-25	162 - 221	100	60 / 60	plus
Harvest35	U35_38928	656	3e-25	162 - 221	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_38928 656 Hv_44K_v2
GGCCTGCAGGTGCTTACCGCCTAATGGCACATGGAACAATGGAAGAGAAAATTATAAGCG
GCAGGTGACAAAAGAAGGGCTTGCAGCAAGAGTGGTGGATAGACAGCAAGTGTCCAGAAC
AATCTCCAAAGAGGAGATGTTGCATCTCTTTGAATTTGGTGATGAGGAATTGTTGGATGA
GAGTGGGAATGATACCATAACTGATCGCACTAGGGTTGGAACGGAGAAGCTATCCATGCC
CAATAGCACTGAACTTCCGGTGGACACGCTCATGCTGAACCTACTTAGTGATCACCCTCG
GTGGATCGCAGGTTACCATGAACATGAAGTTCTTCTGCAAGAAAACGAAGAGGAAAGACT
CACCAAGGAAGAGCAAGATATGGCATGGTCGAGTTTTAAACAATCGCAGCAGTTGGATGC
CGTGGCAAGAAGACATGACACCGAGAGAAAACCAATAGATACCAACCCTGCACCACCTAA
AGTTACCTCAAGAAGTCGGCGGGCGCAACAATCAAAGTCTCATTCGAACAACCAGAAAAA
ATGCACCAACTTGAACCACATGCTGACTCTAAGAAGCCATGGTACCAAAGCTGGATGCAC
GACAAGCTGTGACGAATGTGGCCAGNGCATTAGTTGGGAGACACTAAGCAGATCAG

Homology of Contig U35_38928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31970.1	1477	7e-63	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g27970.1	1503	2e-74
Arabidopsis v10	None