- Probe CUST_4496_PI390587928
- Source Contig U35_38929
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4496_PI390587928 | Hv_44K_v2 | GCGCAGAAATATTGACGCATGTTCCTTTCAGTGGCGTTCCTAAGTTTAACTTAATATGAC | 315 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.603 | 3.235 | 1.767 | 0.784 | 0.396 | 0.374 |
| Raw | 28.437 | 89.104 | 41.653 | 31.748 | 3.705 | 4.480 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC34917 | 396 | 3e-25 | 316 - 375 | 100 | 60 / 60 | plus | ABC34917 |
| Harvest35 | U35_38929 | 396 | 3e-25 | 316 - 375 | 100 | 60 / 60 | plus |
Contig Sequence (396 bp)
>U35_38929 396 Hv_44K_v2 TTTTCAGTCTCAACCATTAACAGATTCATCCATGTCGAAACAGCATCCCCCTGCCCGTCC TCCCTCCTCATCAACGATTCCGCCATCGAGGGCAGAGGAGGTGTGCCCTGTTTAGGAATT TGGGGCGGAAAATTTGACCAATGGCCGCCCGCATTCAAACCCTTCTTGGTAACACAGGAA CTTGGTGGGCTGTGCAGAGAATAGATCATAGATGGATATGATTCTTCTTCTTCTTCTTCG TCGTCGTCATCAAGGTTACGCCTCCGGACTTCCCCTCTGCTGCTTTTAGATTAGCTTTTC AAGTTGTATTTATCAGCGCAGAAATATTGACGCATGTTCCTTTCAGTGGCGTTCCTAAGT TTAACTTAATATGACNNANAAAAAAAAAAAAAAAAA
Homology of Contig U35_38929 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |