barSeed - Barley Seed Development Database

Probe CUST_4492_PI390587928

Source Contig U35_14974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4492_PI390587928	Hv_44K_v2	GTGTGTGTGCTTCAACAGTAATTTGATTGAGCATGTGTAACACTTGTATTTGTTTGATGA	771	GeneList: royalblue MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.833	4.576	1.394	0.759	0.216	0.153
Raw	294.676	474.120	118.816	105.798	9.990	7.605

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248244.1	859	2e-24	756 - 815	100	60 / 60	plus	ABC05807 ABC05808
MLOC	MLOC_12610.1	828	2e-24	186 - 245	100	60 / 60	minus	ABC05807 ABC05808
JLOC1	JLOC1_8462.1	743	8e-25	107 - 166	100	60 / 60	minus
Harvest21	ABC46974	135	3e-25	42 - 101	100	60 / 60	plus	ABC46974
Harvest21	ABC05808	845	3e-25	748 - 807	100	60 / 60	plus	ABC05808
Harvest21	ABC05807	421	3e-25	43 - 102	100	60 / 60	minus	ABC05807
Harvest35	U35_14974	942	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (942 bp)

>U35_14974 942 Hv_44K_v2
TCGAGCACTGTTGGCCTACTAAACCCTCCTACCTCACTCTCACCACCACTAGCGCTAGCC
AGCTTAAACAGCCGGGAGCAATGGCGTCCAGGACCTTCTCGGCGGCCTGCCTGCTGGCGC
TGCTGGTGGCCAACACGTTCCTTGCCGGCGATGCCTGCAACAGCTGCCAGCACCAGACCC
CGCCGCCGGCCACCCCGTCCCCGCCCCCGCCATCGCCGTGCCCACCGCCGCCATCGGGCG
GTGGCGGCACTGGCAAGTCGTGCCCCACGGACACTCTGAAGCTGGGCGCCTGCGCCAACG
TGTTGGGCCTGGTGAGCGTCGGCGTCGGCAAGCCCCCCAGCGGCGGCGGCGACAAGTGCT
GCAGCCTCCTCGGTGGCCTGGCCGACCTCGAGGCCGCCGTGTGCCTCTGCACCGCGCTCA
AGGCCAACGTCCTCGGCATCGTCCTCAACATCCCCGTCAAGCTCAGCCTCCTCCTCAACT
ACTGCGGCAAGACCGCCCCCAAGGGCTTCCAGTGCGCTTAAATCCACCTGCCGCTCAACC
AAAGCAAGGCATGCATGCATGCATCGCCGGTGCATGCGTCCATGCATGTATGTTGTTATC
TTCTTTAGTCGTTCATTCCAAATTTGATTTCATCATGCAATCGGTCGGTTGTTAAGTAGT
TTTTCGTTCGTGCGTGCGTGTGTTCATTTATATGCACTGGTTAATTTGGTGACATTAATT
TGTCTTAGTTTGGCTGTGTACTACGTACAAGAGATACATACGATTGGGTGCGTGTGTGTG
CTTCAACAGTAATTTGATTGAGCATGTGTAACACTTGTATTTGTTTGATGAAATGTAATT
TGCAGAATATTCATTCAAAAAAAAAAAAAAAAAAAAAAATTTTTCATAATTGTTGTGGAT
TCCCAATAGCATATCTTTCCCTTGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_14974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None