barSeed - Barley Seed Development Database

Probe CUST_4488_PI390587928

Source Contig U35_14978

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4488_PI390587928	Hv_44K_v2	GAAAATGGTGTCCAACAATGGTCTTAGGGCAGGAGGTAGGATTTCTGGGCATCATTTTTT	3193	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.754	2.120	1.194	0.738	0.271	0.292
Raw	764.247	897.853	460.319	443.679	57.621	67.883

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3050.1	1345	8e-25	1191 - 1250	100	60 / 60	plus
Harvest21	ABC02819	3289	3e-25	3136 - 3195	100	60 / 60	plus	ABC02819
Harvest35	U35_14978	3347	3e-25	3194 - 3253	100	60 / 60	plus

Contig Sequence (3347 bp)

>U35_14978 3347 Hv_44K_v2
TATACACAACCACCCGACCTCCTCTCGTCCATCTCCCCCTCGCCAAGGAAAAAAGCGCTG
CTGCCAAGACACCAGCCTCATCAGCTGCGGCGGCTACCAGAAGCAAAGCTCCAGAAGCTT
CTCTGGCACCGGCAACGGCCTCCTCACCGCGGGTGTAGTTCGCGATCTAGATCTCAGAAC
CAGCAGTGACCGGAAGATAAAAAGGTCAGGTCGGAGATGAGTGTGGTGGGGTTTGATCTG
GGCAATGAGAGCTGCATTGTGGGGGTGGCCCGGCAGCGTGGAATCGACGTGGTCCTCAAT
GAGGAGTCCAAGCGGGAGACACCCGCTATTGTCTGCTTTGGCGACAAGCAGCGTTTCATC
GGCACCGCAGGCGCCGCCAACTCCACCATGAACCCCAAGAACTCCATCTCCCAGATCAAG
CGCTTACTGGGACGCAAGTTTGCTGATCCTGAGCTGCAGAATGATATTCAGTCCTTCCCG
TTCCGTGTCTCGGAGGGCCCTGATGGATTCCCTCTCGTCCACGTACGCTATCTGGGGGAG
GAGCGCTCCTTCACCCCCACACAGCTGCTTGCCATGGTGCTGTCTAATTTGAAGGCCATT
GCTGAGGGTAACCTCAACTCAGCTGTTATTGACTGCTGCATTGGTATCCCGGTGTACTTT
ACTGACCTGCAGCGGAGGGCTGTTATTGATGCTGCAACAATTGCTGGTCTCCGTCCATTG
CGTTTGTTCCATGAGACTACTGCGACAGCATTGGCATATGGGATCTACAAGACTGATCTC
CCTGAGAACGATCAGCTGAATGTCGCGTTTGTTGATGTTGGGAATGCCAGCATGCAGGTC
AGCATTGTTGGGTACAAGAAGGGGCAGCTCAAGATGCTATCACATGCATATGACCGTTCT
CTTGGCGGAAGGGACTTTGATGAAGCCCTGTTTAAGCACTTTGCAGCAAAATTTAAAGAC
GAGTACAAGATTGATGTCTACCAGAATGCCCGTGCCTGCATTAGGTTGCGTGTGGCATGT
GAGAAGCTCAAGAAGATGCTGAGCGCCAATCCAGAGGCCCCAATGAACATTGAGTGCTTG
ATGGACGAGAAGGATGTACGAGGATTCATTAAGAGGGATGAGTTTGAACAGATCAGTGCA
CCAGTACTAGAACGTGTGAAGGGGCCGCTGGAAAAGGCATTGTCAGAAGCTGGCTTGACG
CCAGAAAGTCTGCACTTTGTTGAGGTTGTTGGATCAGGCTCTCGTGTCCCTGCAGTAATG
AAGATAATTACTGAATTCTTTGGAAAAGAACCAAGGAGAACTATGAATGCAAGTGAATGT
GTTGCCAGGGGATGTGCTCTCCAGTGTGCTATTCTTAGCCCGACATTTAAAGTGCGGGAG
TTTCAGGTTAATGAAGGTTTTCCTTTTTCAGTTGCTTTATCATGGAAGCCAGATGCTCAG
GACAATGAATCCCAACAAACTGTTGTATTCCCCAAGGGGAATCCAATGCCTAGCATCAAG
GCTCTGACCTTCTATAGGTCCAGTACATTTGCAGTGGATGTTTTGAATGTTGACACAGAT
GATTTGCAAATAACACACAAAATTAGCACTTACACGATCGGCCCTTTCCAATCTAGCAAA
GGTGAGAAGGCTAAACTGAAAGTGAAAGTTCGCCTCAACATCCATGGGATAGTCTCTCTT
GAATCAGCAACGATGCTGGAAGAGGAGGAAGTGGAAGTTCCGGTTTCATCTATGAGTGAG
GTGCCAAAGGATGCTACTACAATGGAGACAGATGATGCACCACAGGACCCTGCTTCTAGT
GCTGGTGATCCTGCTGAGGCTGCTGCTGAAAACGGGGCACGAGATTCTGAGGAAAAAACT
GTTCCAATGGATACTGACACAAAGGTTGAGCCATCAAAAAAGAAAGTTAAGAAAACAAAT
GTGCCAGTTGCTGAAATGGTGTATGGGGCAATGGGCACTGTTGAGCTAGAGAAAGCTGTT
GAGAAAGAATATGAAATGGCTCTTCAGGACAGAGTGATGGAAGAAACCAAGGACAAGAAA
AATTCAGTTGAGGCTTATGTTTATGACATGCGTAACAAGATTCATGAGAAGTACAATGAT
TTTGTCATGTCGGAGGATATAGAAGGGTTGATGGCTAAACTTCAGGAGGTTGAGGATTGG
CTGTATGAAGATGGCGAGGATGAGACTAAGGGAGTCTATGTTGCAAAACTAGAAGAACTG
AAAAAGCTTGGCGGTCCTATCGAAATGCGCTACAAAGAGTGGACAGAAAGAGGTCCGGCT
CTTGAGCAATTGGTGTACTGCATCCGCAGTTTTAGAGAGGCTGCATTGTCTGGTGACCAA
AAGTTTGATCACATAGACATATCAGAGAAGCAAAAGGTTGTTAATGAGTGCTCGGATGCA
GAGACCTGGCTAATGGAGAAAAAGCAGCAGCAAGATGCTCTACCGAAGCATGCTAATCCT
GTCCTCCTTGTTTCTGACATAAAGAAGAAGGCTGAAGCACTTGACAGGTTCTGCAAACCC
ATCATGACCAAACCAAGGCCAGCGCCAAAACCACAGACCCCGCCGCTAGCAGAAACCCCA
TCACCCGAGGCTTATACACCAGAAGAACAATCAAATGGAGCAGATGAGTCTGCTGAACCA
GCTAGCGACGGTGCTCAGGATGAGCATGTGGGTGAGCAAATGGACACCGATAAAGATGAT
CCTTCCCAGGCATAAGAGGTGTCGATCTGAGGAGATTTTATGTCCATGATCGGTTGCGCT
ATTGTGCTTTTGGCCTGCTAGGGCGATAAAAGGAATGGCTGTTTTCATACGTTGTGAGGA
TATGAGTAGAACATGGAGAGTTTCTGCAGTGTTTCTAGACGTCTTTGCCTCCTCCAATAG
CGGTTTTTCTTTGACGACGTTTGGCAGATGCATGCAGAACAACTGAGGTTTTGGGGACCC
ATGGTCTCCAGTGTATTTTTTTAATGACGATGGTCCATAACGTTGTAATTTTTATCTACG
GTGGCCCATAGCGATTCAGAAATTTTTGGTCACTACGGAAACAATATTTATGTCGCTATT
GTTAAGCTGAATAAAAAAAAAAAAAAAAACTTTGAGGATGTAGAACTGCAGAAGGTCTGA
GCTTCTTGCGTGCTTCTGCTGACCATCCATCTTTGGAGCATTCCCACCACGATTTGAGCC
AACAGTTGGTGTAGAAAATGGTGTCCAACAATGGTCTTAGGGCAGGAGGTAGGATTTCTG
GGCATCATTTTTTTATCCGCTGTAATTAATGCTTCCAACAAATAATATCAAAATCGTGTC
AAAGTACAACACGAATACTTTTTCTGTTTTTATTTTTCTTAAAGAAA

Homology of Contig U35_14978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g08560.1	846	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi2g33682.1	844
Arabidopsis v10	AT1G79930.1	831	\| Symbols: HSP91 \| heat shock protein 91 \| chr1:30063781-30067067 REVERSE LENGTH=831