- Probe CUST_4485_PI390587928
- Source Contig U35_26951
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4485_PI390587928 | Hv_44K_v2 | AAATGTTGTTCTTCCTTTCGAACATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGG | 281 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.063 | 1.612 | 1.850 | 1.811 | 0.469 | 0.587 |
| Raw | 86.403 | 214.940 | 203.506 | 328.144 | 28.293 | 39.487 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64932.5 | 1883 | 2e-24 | 1180 - 1239 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.6 | 1646 | 2e-24 | 1016 - 1075 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.1 | 1755 | 2e-24 | 967 - 1026 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.2 | 1741 | 2e-24 | 1046 - 1105 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.11 | 1469 | 2e-24 | 833 - 892 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.10 | 1181 | 2e-24 | 754 - 813 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.12 | 1534 | 2e-24 | 932 - 991 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.7 | 1529 | 2e-24 | 969 - 1028 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.8 | 1622 | 2e-24 | 969 - 1028 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.9 | 1520 | 2e-24 | 969 - 1028 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.3 | 1709 | 2e-24 | 1062 - 1121 | 100 | 60 / 60 | plus | ABC19726 |
| MLOC | MLOC_64932.4 | 1802 | 2e-24 | 1062 - 1121 | 100 | 60 / 60 | plus | ABC19726 |
| JLOC1 | JLOC1_42677.4 | 1640 | 8e-25 | 868 - 927 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42677.3 | 1547 | 8e-25 | 868 - 927 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42677.2 | 1568 | 8e-25 | 796 - 855 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42677.1 | 1519 | 8e-25 | 840 - 899 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41073 | 359 | 3e-25 | 254 - 313 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26951 | 387 | 3e-25 | 282 - 341 | 100 | 60 / 60 | plus |
Contig Sequence (387 bp)
>U35_26951 387 Hv_44K_v2 ATGGTTGCTTGTGTAGAGCCAGAAGTTGTAGATTCTGTATATGGAGAAGAACGTACGGGG GACATGTCTTTCCTTGAGCATAACTATTCGAAAGCAAAGTTCCATGTGCGCCTGAAACGA AGGAATGGACGGGTGAAGCATCTGCATGAGGAGTTATGTGTTGAGGGATATGATGTAAAA TTTGTTTCTGCTACTTCTGTAAGTATGGAAGTGAACCAAAGTCTACTACCTAAGGTTCAG TTCAATCTTGAGCTGTCAGAAAAGGAACGGAGTGACAGGGCAAATGTTGTTCTTCCTTTC GAACATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGGACGGCGATCTCTCCCGGAG GCTCGTCAAGATCTCAATTTTACTACG
Homology of Contig U35_26951 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g10460.1 | 385 | 6e-64 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g71057.1 | 385 | 1e-70 | |
| Arabidopsis v10 | None |