- Probe CUST_4473_PI390587928
- Source Contig U35_14980
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4473_PI390587928 | Hv_44K_v2 | ATCAAGAAGAATTCAGCTGCCGTCATCAAGTTCCTTGACGAGATGGCCAAGATTGGTTTC | 333 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.808 | 2.701 | 1.300 | 0.627 | 0.520 | 0.463 |
| Raw | 38.983 | 54.353 | 23.478 | 16.761 | 2.684 | 2.660 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12553.1 | 1352 | 2e-24 | 616 - 675 | 100 | 60 / 60 | plus | ABC03120 |
| MLOC | MLOC_12553.2 | 805 | 2e-24 | 527 - 586 | 100 | 60 / 60 | plus | ABC03120 |
| MLOC | MLOC_12554.1 | 2521 | 7e-23 | 888 - 944 | 100 | 57 / 57 | plus | ABC03120 |
| JLOC1 | JLOC1_8427.1 | 1466 | 8e-25 | 554 - 613 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46913 | 453 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41478 | 421 | 3e-25 | 277 - 336 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03120 | 1154 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | ABC03120 |
| Harvest21 | ABC03119 | 658 | 3e-25 | 321 - 380 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14982 | 551 | 3e-25 | 339 - 398 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14981 | 1225 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14980 | 558 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus |
Contig Sequence (558 bp)
>U35_14980 558 Hv_44K_v2 GTACTGCTGCCCATTGATAGGCTGGTGATCACTTCTGTCGAGAGGAACTACGCATCCATC TCTTCAACCTCCAGCTATCTGCAGCACACATCTTTGAAGGAGAGGAATATGACGAGCGTA TGGAAGACCAAGGTTCTCCCCGGGCTCAGCAAGTTCTTCGACAAGGATGGCAAGAAGGCC GCCGCCGCCGAGTTCTTGAAATCCTTCAACAAGGAAGAGATTGACAAGGAGATTGAGGAC AAGAAGACAGAACTAGAGCCCAAGGTTGTGGAGACTATTGAAGCATCTCCTCCAGAAATT AAGGGCTTGATAAAGGATAAGAAAACATCCAAGATCAAGAAGAATTCAGCTGCCGTCATC AAGTTCCTTGACGAGATGGCCAAGATTGGTTTCCCCGGAGCCAAGCTGGTGAGCGACGCG GTGGTCAAGTCCGGCTCTCCCCCGCCATCGTCTTCATCTTGGACAAGGTTGCGCCCTTCG TCCCAGCGCCTAAAGAGGAGCCCAAGGCCGAGCCTGAGGCCGCCGCCGCCGCCCCGGCAG AGGAGACCACCACCCGCG
Homology of Contig U35_14980 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |