barSeed - Barley Seed Development Database

Probe CUST_4472_PI390587928

Source Contig U35_14981

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4472_PI390587928	Hv_44K_v2	AAACCCTGGGCGATGAATCATACAGAGTAGCTGAACTGCTGAACGGCTGTTGATATGAAA	1151	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12554.1	2521	3e-21	2238 - 2294	98	56 / 57	plus	ABC03120
JLOC1	JLOC1_8427.1	1466	2e-21	1356 - 1412	98	56 / 57	plus
Harvest35	U35_14981	1225	3e-25	1152 - 1211	100	60 / 60	plus

Contig Sequence (1225 bp)

>U35_14981 1225 Hv_44K_v2
AGTACTGCTGCCCATTGATAGGCTGGTGATCACTTCTGTCGAGAGGAACTACGCATCCAT
CTCTTCAACCTCCAGCTATCTGCAGCACACATCTTTGAAGGAGAGGAATATGACGAGCGT
ATGGAAGACCAAGGTTCTCCCCGGGCTCAGCAAGTTCTTCGACAAGGATGGCAAGAAGGC
CGCCGCCGCCGAGTTCTTGAAATCCTTCAACAAGGAAGAGATTGACAAGGAGATTGAGGA
CAAGAAGACAGAACTAGAGCCCAAGGTTGTGGAGACTATTGAAGCATCTCCTCCAGAAAT
TAAGGGCTTGATAAAGGATAAGAAAACATCCAAGATCAAGAAGAATTCAGCTGCCGTCAT
CAAGTTCCTTGACGAGATGGCCAAGATTGGTTTCCCCGGAGCCAAGCTGGTGAGCGACGC
GGTGGTCAAGTCCGGCACCACGCCCCTCTCCCCCGCCATCGTCTTCATCTTGGACAAGGT
TGCGCCCTTCGTCCCAGCGCCTAAAGAGGAGCCCAAGGCCGAGCCTGAGGCCGCCGCCGC
CGCCCCGGCAGAGGAGACCACCACCCGCGAGGTCGCCGTGGAGGAGGAGAAGAAGGAAGA
GGCCGAGCCCTCCGCTGCGCCGGCAGAAGCGGCCGCACCGGCGGAGGTAGCCGCGCCCGC
TGAGGTAGTGGAGGAGAAGAAAGAGGAGGAGAAACCCGCCGAAGCCGCCGTACCTGCCGC
CGCTGAGCCGGAGAAGAAGTGATCTGTCGCCGCCGGACTCCAAGAGCAACGCAAGCCACC
ACCTGGCTTGCTAGCTGCTGGTAATGGAAGAAAACATTTTAAGTTATTGTGAATTTGTGG
TCGCTCTCCCGTGTCAAGGTAGCTGCACAAAAGTAAGCACGTACGTACGTACGTACGACG
ACGCACTGCACTTGCCATGCATATCACGCATGCAAACGTACGTACACGCATGGAACATTT
GTTATTCTTTCGATGGATCGGGTCTCCTCACCGTATGTGTACATTTTACGTGGGGCTTTC
TTGCTTTTTTTTTTGTGGTGATTAAAACCTGTGTAATTATGATTATGTTGGTGTGTTAAT
TTGTTGGCCATGGTAATTAAGCACGAACTTGTGCATTCTTCTTCTAAAAAAAAAAAAAAA
AAAACTTGCGCAAACCCTGGGCGATGAATCATACAGAGTAGCTGAACTGCTGAACGGCTG
TTGATATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None