- Probe CUST_4471_PI390587928
- Source Contig U35_14982
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_4471_PI390587928 | Hv_44K_v2 | ATCAAGAAGAATTCAGCTGCCGTCATCAAGTTCCTTGACGAGATGGCCAAGATTGGTTTC | 338 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12553.1 | 1352 | 2e-24 | 616 - 675 | 100 | 60 / 60 | plus | ABC03120 |
MLOC | MLOC_12553.2 | 805 | 2e-24 | 527 - 586 | 100 | 60 / 60 | plus | ABC03120 |
MLOC | MLOC_12554.1 | 2521 | 7e-23 | 888 - 944 | 100 | 57 / 57 | plus | ABC03120 |
JLOC1 | JLOC1_8427.1 | 1466 | 8e-25 | 554 - 613 | 100 | 60 / 60 | plus | |
Harvest21 | ABC46913 | 453 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus | |
Harvest21 | ABC41478 | 421 | 3e-25 | 277 - 336 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03120 | 1154 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | ABC03120 |
Harvest21 | ABC03119 | 658 | 3e-25 | 321 - 380 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14982 | 551 | 3e-25 | 339 - 398 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14981 | 1225 | 3e-25 | 335 - 394 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14980 | 558 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus |
Contig Sequence (551 bp)
>U35_14982 551 Hv_44K_v2 GTACTGCTGCCCATTGATAGGCTGGTGATCACTTCTGTCGAGAGGAACTACGCATCCATC TCTTCAACCTCCAGCTATCTGCAGCACAGTAGACATCTTTGAAGGAGAGGAATATGACGA GCGTATGGAAGACCAAGGTTCTCCCCGGGCTCAGCAAGTTCTTCGACAAGGATGGCAAGA AGGCCGCCGCCGCCGAGTTCTTGAAATCCTTCAACAAGGAAGAGATTGACAAGGAGATTG AGGACAAGAAGACAGAACTAGAGCCCAAGGTTGTGGAGACTATTGAAGCATCTCCTCCAG AAATTAAGGGCTTGATAAAGGATAAGAAAACATCCAAGATCAAGAAGAATTCAGCTGCCG TCATCAAGTTCCTTGACGAGATGGCCAAGATTGGTTTCCCCGGAGCCAAGCTGGTGAGCG ACGCGGTGGTCAAGTCCGGCACCACGCCCCTCTCCCCCGCCATCGTCTTCATCTTGGACA AGGTTGCGCCCTTCGTCCCAGCGCCTAAAGAGGAGCCCAAGGCCGAGCCTGAGGCCGCCG CCGCCGCCCCG
Homology of Contig U35_14982 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |