barSeed - Barley Seed Development Database

Probe CUST_4470_PI390587928

Source Contig U35_14983

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4470_PI390587928	Hv_44K_v2	TGCTCGCCTGATATGTGAAAAGCATCTGAAATCTCCTTACGGGAAAAGGTTCCCAAAAAA	1299	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.090	1.748	1.044	0.832	0.356	0.328
Raw	184.175	259.390	128.165	169.020	23.738	24.166

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_18113.1	1355	1e-23	1219 - 1276	100	58 / 58	plus
Harvest21	ABC03921	1370	3e-25	1300 - 1359	100	60 / 60	plus
Harvest35	U35_14983	1370	3e-25	1300 - 1359	100	60 / 60	plus

Contig Sequence (1370 bp)

>U35_14983 1370 Hv_44K_v2
CCCGGCCCAGATGCAGGATGACGCGTACGAGGAGGAGGGAGAGGGAACAAGGAAAATATA
AAAACGAAATCCCGCAAAATCCTCGCATCTCTGTCCTTCTCCTCCCCAAACCCAGAAAAT
CCCCTTATCCCCTCTCGCCCACGGACCCCCTCGACCGTCCATGGCGATGGCGTCCTCCAC
CACCGCCTCCATCGCCGCGGCGTCCCTCCGCGCGCTCGCCGGCGCCTCCCCGGCCCCGCT
CCCGAAGCCGTTCCTCGTGCTGCTCTCCCCGGCCCTCCCACGCCGCCTCGGCCTCGGCCT
CCGCGCCGCCCGCCCGCGCGGCCCGCTCGCGCCGCTCGCCGCCTCCGACTCCTTCGAGAC
CTCCGCGGCCGTCGACGTCGCCGAGCCGGAGGACGAGGCCCTCGAGGCCGTCGCGGAGGA
GGAGCCCGCCGTGGCCGTGGCCGAGGAGGAGTTTGACGTGGCGGCCGAGGAGGAGGTCGG
GGAGTACGTGGAGCCGCCGGAGGAGGCCAAGGTGTACGTCGGCAACCTGCCCTACGACGT
CGACAGCGAGCGCCTCGCGCAGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCTCCGAGGT
CATTTACAACCGAGAAACCGACCAGAGCCGTGGATTCGGGTTTGTCACCATGAGTACCAT
TGAGGAGGCTGAGAAGGCTGTAGAGATGTTCCATCGCTACGATGTGAATGGGAGGCTGTT
GACTGTAAACAAGGCAGCTCCTAGAGGCGCCCGGGTGGAAAGGCCTCCCCGTGATTCCGG
GTCTTCATTCAGGATCTATGTGGGCAACCTGCCATGGCAAGTGGACGACTCTAGGTTGGT
GGAGCTGTTCAGCGAGCATGGCAAAGTGGTCGATGCCAGGGTCGTCTACGACAGAGACAC
TGGGCGCTCACGAGGCTTCGGTTTCGTGACAATGGCGTCGCAGGAGGAACTGGATGACGC
CATCGCTGCCCTCGATGGACAGAGCTTGGAGGGGCGTGCCCTAAGGGTCAACGTCGCGGA
GGAGCGGCCACCGCGGAGGTTCTAATGAAAGTATATTTGGCGGTGCACTACGACAAGATT
GCTGCGTAAGAGACACGATAGCACGCCCGATACCGGCTTAGATCCCATCATCATCCTCCC
ATCCATCCTTGTGCCATGCATGTCTCCTCTCTCTCCTTGTTTTTCTCTTTTGCTATCTGC
CTGTTGCTTCCATGTTCACAATCTGTCGATGCAATTCAAAAGTTTTGTCTGACATACTAC
GCATATGTTTAAACCCCATGGGTGTTGCCCTAAGATTTGTGCTCGCCTGATATGTGAAAA
GCATCTGAAATCTCCTTACGGGAAAAGGTTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39180.1	323	7e-111	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi4g38260.2	297	3e-113
Arabidopsis v10	AT4G24770.1	329	1e-89	\| Symbols: RBP31, ATRBP31, CP31, ATRBP33 \| 31-kDa RNA binding protein \| chr4:12766223-12767952 REVERSE LENGTH=329