- Probe CUST_4467_PI390587928
- Source Contig U35_49628
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4467_PI390587928 | Hv_44K_v2 | TTGAAGTACTTTGTTGAGGCTGGAGCAATTGCAGTAAGACGTGTGCGTAAGGAGGATTTG | 478 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.954 | 1.117 | 2.064 | 2.017 | 0.737 | 0.803 |
| Raw | 644.264 | 1130.594 | 1914.427 | 3024.341 | 382.633 | 453.811 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62859.4 | 1990 | 2e-24 | 1081 - 1140 | 100 | 60 / 60 | plus | ABC03654 ABC37785 |
| MLOC | MLOC_62859.3 | 2116 | 2e-24 | 1193 - 1252 | 100 | 60 / 60 | plus | ABC03654 ABC37785 |
| MLOC | MLOC_62859.2 | 2042 | 2e-24 | 1131 - 1190 | 100 | 60 / 60 | plus | ABC03654 ABC37785 |
| MLOC | MLOC_62859.1 | 2032 | 2e-24 | 1182 - 1241 | 100 | 60 / 60 | plus | ABC03654 ABC37785 |
| JLOC1 | JLOC1_41160.1 | 2326 | 8e-25 | 1046 - 1105 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51460 | 543 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03654 | 2022 | 3e-25 | 982 - 1041 | 100 | 60 / 60 | plus | ABC03654 |
| Harvest35 | U35_49628 | 543 | 3e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15684 | 2100 | 3e-25 | 986 - 1045 | 100 | 60 / 60 | plus |
Contig Sequence (543 bp)
>U35_49628 543 Hv_44K_v2 TCTCCTCTCGAACTCTCCAGTCCCACTGCCCCTTCCCCACCCCCGCCGCCGCCATGGCGA TCACCGCCCAGGTCCCCGACATCATGGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACCC AGAACGTATCGGCGTGCCAGGCGGTGGCCAACATCGTCAAGTCCTCGCTCGGCCCCGTCG GGCTCGACAAGATGCTCGTGGATGACATTGGCGATGTCACGATCACGAATGACGGAGCCA CCATTCTGAGGATGCTGGAGGTCGAGCATCCCGCGGCAAAGGTTCTCGTGGAATTGGCTG AGCTCCAAGACCGGGAGGTTGGAGATGGAACTACCTCTGTTGTTATCATCGCTGCAGAGT TGCTCAAGAGAGCCAATGATCTTGTGAGGAATCTGACATAACAAAGGAGCGAATTGAGAA AGTTCTCAAGGCTGGTGCTAATGTTGTATTTACCACCAAGGGAATTGATGATATGTCATT GAAGTACTTTGTTGAGGCTGGAGCAATTGCAGTAAGACGTGTGCGTAAGGAGGATTTGCG CCA
Homology of Contig U35_49628 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g46620.1 | 546 | 5e-64 | protein|T-complex protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g17750.1 | 546 | 6e-65 | |
| Arabidopsis v10 | AT3G20050.1 | 545 | 8e-62 | | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha subunit | chr3:6998544-7002266 REVERSE LENGTH=545 |