barSeed - Barley Seed Development Database

Probe CUST_4458_PI390587928

Source Contig U35_37651

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4458_PI390587928	Hv_44K_v2	TCTGAGTGAACTTGGCAATCTCAACGATATGAACAGTCCGAAAGAGCTTGATTGTACTGA	617	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.267	1.037	1.070	0.780	0.477	0.427
Raw	208.522	245.046	242.175	268.068	58.634	58.949

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5502.1	5444	2e-24	834 - 893	100	60 / 60	minus	None
MLOC	MLOC_5502.2	6008	2e-24	1398 - 1457	100	60 / 60	minus	None
JLOC1	JLOC1_3539.1	5976	8e-25	4550 - 4609	100	60 / 60	plus
Harvest35	U35_37651	677	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_37651 677 Hv_44K_v2
CACGCGTCCGGTCATGCATGCCGTCTGAGAGCTGTTCCTGTTTGTCCATATGCACAAGCT
GATGCAATTCTTAAGGATCAATCAGATAGGGAAGACACCATGAATAGGTCTATAGAGGAC
AAGGGCATCAATTGTCCGAAAGATCTCTTCACTTCCGATGATCTGAAAGAGCTTCATGGT
CATAACATTGAGGAGCTCCAGAGTCATAGCATTGAGGAACAGGTTCCTGATAGTATTTGT
TTGGAAGTGCTAGAGGATTATAATGATCTGAAAGAGCCAGGCAGTCATAGCACCGAGAAA
GAGCTTGATGACTGTAATGGGTTAAAGGAGCCGGAGAGCCATAACAATATGGAAGAGCTT
GACTGTCATAGCACTGAGAAAGAGCTTGATGATTGTAATGGGTTAAAGGAGCCGGAGAGC
CATAACAATATGGAAGAGCTTGACAGTCATAGCATTGAGAAAGAGCTTGATGATTGTAAT
GGGTTAAAGGAGCTAGAAAGCCATAACAATATGGAAGAGCTTGACAGTCATATCACTGAG
AGGAGTCCTCATGATCATAATAATCTGAATGAGCATGACAGTCACTGGGGTGAGAAAAAG
CTTGATGATTGTAACTGTCTGAGTGAACTTGGCAATCTCAACGATATGAACAGTCCGAAA
GAGCTTGATTGTACTGA

Homology of Contig U35_37651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g18770.1	1749	1e-60
Arabidopsis v10	None