barSeed - Barley Seed Development Database

Probe CUST_4454_PI390587928

Source Contig U35_37655

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4454_PI390587928	Hv_44K_v2	TTATTTGTTTGCCTGTTCTGTTTCTTCTGTTCTAACCATGGATGCAGGCTCCCGCTCGAT	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15791.1	1988	2e-24	1589 - 1648	100	60 / 60	minus	ABC19055
JLOC1	JLOC1_10850.1	2021	8e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_37655	738	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_37655 738 Hv_44K_v2
CACGCGTCCGGATCCATCGATCCGCGTTTACTCCTGTCGCGATTACTGTTATTTGTTTGC
CTGTTCTGTTTCTTCTGTTCTAACCATGGATGCAGGCTCCCGCTCGATCTCCTCCGGCAA
GAACCGCGCCGGCGCCGTGCAGCGGCCACCGCTCCAGGAGGCCGGATCCCGCCCCTACAT
GCCGTCGCTGAGCACGCGCAACCCGTCGGCCAAGTGCTACGGGGACAGGTTCATCCCGGA
CCGGTCGGCGATGGACATGGACGTGGCGCACTACCTGCTCACGGAGGGAAAGAAGGACAA
GGAGAACGCGGCGGCATCCCCGTCCAAGGAGGCCTACCGGAGGCTGCTCGCCGAGAAGCT
GCTCAACAACCGGACGCGGATCCTCGCCTTCAGGAACAAGCCGCCGGAGCCGGAGAAGGT
CTTCGCTGCCGACACGGTTTCTTCTCACCAGGCTAAGCCGTCCAAGCAGAGGCGCTACAT
TCCCCAGTCTGCCGAGAGTACTCTTGATGCACCGGACCTCGTCGACGACTACTACCTCAA
CCTAATGGACTGGGGGAGCAGGGACGTGCTGTCCATTGCGCTGGGCGACACCATGTACCT
GTGGGACGCCTCAAGTGGATCCACATCTGAGCTTATGACAGTCGAGGAGGACAACGGCCC
CATCACCAGCGTCAGCTGGGCTCCTGATGGCCAGCATCTTGCTATTGGGCTCAACTCGTC
TGACATCCAGCTCTGGGA

Homology of Contig U35_37655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47180.1	470	3e-131	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g52490.1	471	2e-135
Arabidopsis v10	AT4G33270.1	457	5e-73	\| Symbols: CDC20.1 \| Transducin family protein / WD-40 repeat family protein \| chr4:16044545-16046590 REVERSE LENGTH=457