barSeed - Barley Seed Development Database

Probe CUST_4453_PI390587928

Source Contig U35_37656

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4453_PI390587928	Hv_44K_v2	TACCGCTCATGTACTGCCTAAAATGTGGATAAGATAATATACGGATGGAGCCGCCGAAAT	60	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.352	1.813	1.757	0.865	0.203	0.276
Raw	272.430	565.045	475.147	379.978	30.119	44.493

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15791.1	1988	2e-24	31 - 90	100	60 / 60	minus	ABC19055
JLOC1	JLOC1_10850.1	2021	8e-25	1902 - 1961	100	60 / 60	plus
Harvest35	U35_37656	732	3e-25	61 - 120	100	60 / 60	minus

Contig Sequence (732 bp)

>U35_37656 732 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTAACGAGGTTCAGCAATGTGCCTACATCCCCGGGAAGCCGA
ATTTCGGCGGCTCCATCCGTATATTATCTTATCCACATTTTAGGCAGTACATGAGCGGTA
TTACATACCCAGGAACTGTATTTAGCATGTTTTCTGTACACACAGCACGGCTGTCTCCCT
ATATGAGTAGGACCATATTCCAGTTCAAGAGATTGATTGTTGGCATTGTTCGTCTTATCG
GATATGTTTGAAGCTGTTGAACATGCCGGTGTGGGAAGCCTTGGGCGCAGGATTGGCCAC
CTCAGGAGTGCCAAACACGTCCCAGAAGCGGAGGGTCTCGTCCGCAGAAGCCGATGCTAC
CGTGCAACCATCAGGACTCTGTGCCATGAAAAGAACACGGGAGGTATGGCCACTGAGTTC
GGCCATCTTGACCATCGAAGGGTACTTCCACAATGTCAGCTGGTTGTGCGTGAACCCGTG
TGAGCTCAGCAGCTCCCTCTCGTTCTTGTTCCACAGAAGAGAGCACACCTGCGACCCGGT
ATCAACCGAGTTGAGGCATGCGCCCGTGTGCGTGTTCCAGAACTTGATGCACCGGTCGCT
AGCGCCACCGCCGGTCGCCAGCAGGTTGCTCTGGAATGGGCACCCATGCAGCGCCTTCAC
GGCGGNCATGTGGTCCTCCAGCCTGTGCAGCCACTGGTTGCGGCCTGGGGATGGCATANA
GGATGCCATCGA

Homology of Contig U35_37656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47180.1	470	5e-102	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g20910.1	469	1e-104
Arabidopsis v10	AT4G33270.1	457	4e-81	\| Symbols: CDC20.1 \| Transducin family protein / WD-40 repeat family protein \| chr4:16044545-16046590 REVERSE LENGTH=457