barSeed - Barley Seed Development Database

Probe CUST_4450_PI390587928

Source Contig U35_49631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4450_PI390587928	Hv_44K_v2	AGGATCACATGGTGGCCTCTGACTACGGGCAGCTCCTGAGCTACGACAACGAGCTCGACT	570	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62436.2	825	2e-24	118 - 177	100	60 / 60	minus	None
MLOC	MLOC_62436.1	1550	2e-24	598 - 657	100	60 / 60	minus	ABC09250 ABC09252 ABC53019
JLOC1	JLOC1_40863.1	1337	8e-25	891 - 950	100	60 / 60	plus
Harvest21	ABC51463	630	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_49631	630	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_49631 630 Hv_44K_v2
CCAACTACCTCCGGCCGGACATCAAGCGCGGCCGCTTCTCCTTCGAGGAGGAGGAGGCCA
TCATCCAGCTCCACAGCATCCTCGGCAACAAGTGGTCAGCCATTGCGGCGAGGCTGCCCG
GACGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCAAGCGCCTCCTGC
GCATGGGCATCGACCCCGTCACCCACGCCCCGCGCCTCGACCTCCTCGACCTCTCCTCGC
TCCTCAAGCCCGCCGCCTACTACCCCACGCAGGCCGACCTCGACACGCTCCGCGCCCTCG
AGCCGCTCGCCAACTACCCGGACCTCCTCCGCCTCGCCTCCACCCTCCTCTCAGCCCCGA
CCACCACCACCTCGCAGTCGCAGCCCACCAGCGAACACCAGATGCTCCTGCCTTGGCTGA
TCCAGGCGCAGATGGCGCAGCAGCAGGTATCTCATTCTCAGGCGCCGCCACAACACGCCA
CGGCCGCAGACATGTTCATGCAGCCCAGCTCGGCGTCGGCGTGCCAAATGCCAGGCCTGG
CTCACGCGAACCAGGCGCAGCAACTACACCAGGATCACATGGTGGCCTCTGACTACGGGC
AGCTCCTGAGCTACGACAACGAGCTCGACT

Homology of Contig U35_49631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37210.1	369	2e-74	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g24887.1	373	2e-60
Arabidopsis v10	None