barSeed - Barley Seed Development Database

Probe CUST_4446_PI390587928

Source Contig U35_49635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4446_PI390587928	Hv_44K_v2	ACCTCCTCAGAAGAAAGAATGTGACTACAGGAATGGAAAATGGGTTCCTGATAACCACAG	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366160	1880	2e-24	619 - 678	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.1	4190	2e-24	380 - 439	100	60 / 60	plus	ABC09037 ABC40815
MLOC	MLOC_11243.5	1406	2e-24	181 - 240	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.3	1590	2e-24	388 - 447	100	60 / 60	plus	ABC40815
MLOC	MLOC_11243.2	4267	2e-24	467 - 526	100	60 / 60	plus	ABC09037 ABC40815
JLOC1	JLOC1_7431.5	2080	8e-25	327 - 386	100	60 / 60	plus
JLOC1	JLOC1_7431.2	2146	8e-25	386 - 445	100	60 / 60	plus
JLOC1	JLOC1_7431.1	2139	8e-25	386 - 445	100	60 / 60	plus
Harvest21	ABC51468	585	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_49635	585	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_49635 585 Hv_44K_v2
CATTCCTCCAGCACCTGGGCAAGGACTGGGGCCTCCTTGTCTCACCTCGCCGCCGGCCGG
CCGGCTCTGGCCGGCTTTGGAGAGAAGCGAGCCCTCTTGTCCTATTCCTGCTCTCCCGCG
GGATGCTCGGCCGGCGAGCTCAAGCCCCAAGGTCAGTCAGTACGGCTACCTGCCATTGCC
ACATATCTGTCATTTGAAGAAATCTGTGCTTCAACTTCAGTAGAGGAGAATGAGGCTTGT
GTGTGTAAATGGCCTGAGATTCAGGCACCTCAGACCTGCGTTCCTCGCCGTCTTTACAGT
GTTTTTTCTTTTGAAATGGGAGAAGGGGTCTCTGTACAGTCCTGGTATCCTCCGACCGGA
GTCATTAGTCTTGAATCGGAATACCTCCATGGAGGAAGATCTCCTCATCATCGATCCGTT
GGTGCAATCGGTCGCTGAAGTAAGAAAGGAAACCATTTCTGCACCTCCACCTCGAAACAT
AGTTCATAACTCTGAAGATGTCATTGATAACGCTGGAACAGCACCTCCTCAGAAGAAAGA
ATGTGACTACAGGAATGGAAAATGGGTTCCTGATAACCACAGGCC

Homology of Contig U35_49635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None