barSeed - Barley Seed Development Database

Probe CUST_443_PI390587928

Source Contig U35_38376

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_443_PI390587928	Hv_44K_v2	CACAACGTGGGCACGCTGGAAATATCATTACCGAGTCATATTTGTCAGTCTCATTTTCTC	606	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.408	0.962	0.950	1.463	0.737	1.230
Raw	3.800	19.461	17.127	42.851	6.034	13.569

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4937.1	2229	4e-23	1366 - 1425	98	59 / 60	plus
Harvest21	ABC34326	722	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_38376	722	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (722 bp)

>U35_38376 722 Hv_44K_v2
GGTTGAATATAACAGAACACTACCTCGGGGAAGGAACAGATTAAGTATCTTGTTTACTCT
CTGGAGAAAGCGATTATGAATCTGACGGATGATCAGGAGAAGATGGTGTGGATGATAGAC
TTCCAGGGCTGGACCATGGGAAGCACACCGCTGAAGGTGACCCGGGAGACCGTGAGTGTC
TTGCAAGACTGTTATCCCGAGAGATTGGGACTTGCAATCCTTTACAATCCTCCTAGATTA
TTTGAGTCTTTCTATAAGGTGAGCGGTTGCACAACCTCAATTATCATGATTACTCTGTGA
ACAACATTTATGCTTTTTGTTTTCTACATTCAAGAAGTACTATTGTGCCAGTATTCGACA
GTTCTTTGCTTTATTGCTAATTCTGTAGTCAGATCACAGCTCTTTAGTTATCCCACCAAT
TTGTCTTCTTTTTAAAAATACCAATTTGTCTTTTCTAATTATGTTAGCTGTATTACTTCG
TCATATTTGGCGGTCTCCTCTAAATCTCTAATATATCTTTTTTAGTGTGAATTAACCGTT
AAAAATTCCATTGTGGTGTGCTGTGTTCCTTGATACAAAATCCAAACTGTGGAAGCACTT
ATAAACCACAACGTGGGCACGCTGGAAATATCATTACCGAGTCATATTTGTCAGTCTCAT
TTTCTCTTANATAGATTGCAGTGGTTATTCGAGGTAAAAAAGACGACCGCACTGGTAACT
GT

Homology of Contig U35_38376 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None