- Probe CUST_4436_PI390587928
- Source Contig U35_25687
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4436_PI390587928 | Hv_44K_v2 | TCGAGCATGACCACGCCGACCTCGTCGGGGAAGAGGAGGACGATGAGGACGATGATGAAC | 355 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.285 | 0.468 | 0.989 | 1.924 | 1.626 | 1.472 |
| Raw | 7.229 | 22.046 | 40.621 | 116.736 | 37.067 | 36.294 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK359946 | 814 | 2e-24 | 375 - 434 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_62083.1 | 987 | 7e-23 | 603 - 662 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_40609.1 | 784 | 4e-23 | 415 - 474 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC22090 | 466 | 3e-25 | 356 - 415 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25687 | 466 | 3e-25 | 356 - 415 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_25687 466 Hv_44K_v2 CTCTTGCAGCTTGATCAGTTGGAGAACCAGAGTAGGACGACGCATGGCTTCATCGGCGGC GAGTCAGCAGCAGGCGGCAGGGAGCATGATGGCGCGGGTGGACCGGCTGGACCTAGTGGT GGCGTACCTGGAGGAGGGGATGCGCCACCACAGCGGCAGGTCGTCGACCACCGCGACCAG CACGCTGTCCTCGTCGTCGTCCCCGACCACGCCTCGGTCTTGCCGGCCTCACGGGTGCCG GCCGGCGGAGGAGCTGCTGAGGGAGGCCGAGGCCAAGGGCAGCCTCGTGGACCGCATCGC GTTCCTGGAGGACCGGGTGCTCCGCATGGAGGAGGAGCGCGTGGAGTTGCTGTCGTCGAG CATGACCACGCCGACCTCGTCGGGGAAGAGGAGGACGATGAGGACGATGATGAACGGCGG CGGCGGCGGCGAGGCTGGCGACGGGAGGAAGGGGAAGAAGGGGCTC
Homology of Contig U35_25687 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |