- Probe CUST_4434_PI390587928
- Source Contig U35_37660
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4434_PI390587928 | Hv_44K_v2 | ATTTCAAGATCTGCATGGACGCCGCAGCGGAGGGTTACGAAGGCCGAGGTTGAGGTGGCG | 5 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.883 | 1.484 | 2.230 | 1.244 | 0.338 | 0.489 |
| Raw | 75.563 | 184.293 | 251.942 | 221.662 | 21.068 | 34.043 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71951.1 | 1669 | 6e-24 | 819 - 877 | 100 | 59 / 59 | minus | ABC26505 |
| JLOC1 | JLOC1_47849.1 | 1673 | 3e-24 | 552 - 610 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_37660 | 172 | 3e-25 | 6 - 65 | 100 | 60 / 60 | plus |
Contig Sequence (172 bp)
>U35_37660 172 Hv_44K_v2 TCCTGATTTCAAGATCTGCATGGACGCCGCAGCGGAGGGTTACGAAGGCCGAGGTTGAGG TGGCGCCGTTCGCGGACCTGACGAACAAGAGGGAGAAGCCGCTGTCCTCAGCGCGGTTCG GCCGGAAGGCGCCCAAGCCCAGCCCAGAAGGCAGCAGGGCGTTGCGGGTGTC
Homology of Contig U35_37660 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |