barSeed - Barley Seed Development Database

Probe CUST_442_PI415269222

Source Contig TA49091_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_442_PI415269222	Hv_44K_v2	GTATCTCCTGCTAATCTGTTATGTTAATTGCTACGACTTGCCCTTCATGATTTCATAAGC	310	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.399	2.479	1.534	0.674	0.177	0.150
Raw	2028.282	3241.938	1711.663	1215.732	106.943	100.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42925.1	445	7e-23	241 - 300	98	59 / 60	plus	None
JLOC1	JLOC1_27738.1	331	4e-23	187 - 246	98	59 / 60	plus
Harvest35	U35_7290	483	5e-23	307 - 365	98	58 / 59	plus

Contig Sequence (370 bp)

>TA49091_4513 370 Hv_44K_v2
CCACCGCGGGGCACCCGGCCGCGACGCCGGAGAACGCTGCGGCTTACAACGGGAGGATGG
CGGAGCGGGCGGCGCGGGGCGTCGGCACGCCGCGCCGGCCCGGGGCGCCCGTGGAGGTGT
TCCTGTTCGACCTCTACGACGAGGACGGAAAGCCCGGCACCGAGTTCGAGCGCCACTTCG
GCATCTTCCGGGCCGACGGCGCCAAGGCCTACAACATCAACTTTGCCTAGTAGAGCTGCT
TGTATGGAGATGATAAGCACGCTGTTGATCTGTGGATCAACCGGCCGATATGCTAACGTG
ATCTACCGATGTATCTCCTGCTAATCTGTTATGTTAATTGCTACGACTTGCCCTTCATGA
TTTCATAAGC

Homology of Contig TA49091_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None