barSeed - Barley Seed Development Database

Probe CUST_442_PI390587928

Source Contig U35_38377

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_442_PI390587928	Hv_44K_v2	CAAGGCTCTTAATCTGTTCCAGCTTACTAGTTTTCTCAGGAGCAAGAACATATATTTGAT	636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251173.1	2389	2e-24	2062 - 2121	100	60 / 60	plus	ABC02392
MLOC	MLOC_46197.1	448	2e-24	38 - 97	100	60 / 60	minus	ABC02377 ABC02393
JLOC1	JLOC1_29932.1	351	8e-25	35 - 94	100	60 / 60	minus
Harvest21	ABC34327	699	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_38377	699	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_38377 699 Hv_44K_v2
GGACCTACCTACCTAACCCTAAGGGAAGTGCATCTATTCCTGCTTGTAGGCGTCGACTTC
AAGGTCAAGATGGTTAACATTGCCGGCAAGAAGCTTAAGCTCGCCGTCTGGGACAATGCT
TCCAAATCCACCAGGCCAAGTATTGCTACTGTTGTTATATGCCAAGCGAAGTTATTTTGA
ACTCCTCGGTACGTAGCCGCCAGGGTTATGAAATCCAACCATGTACTCAATTCCGATTCC
TTCACTTATTTTGCAACATACCTGTATTGCGATGATTGTGATGTTCCTAATGGCTCCAGT
GTTTGTTCATTTCGGAGAAGAGGCTTCAATGTCTATTGTGATAGTTCAGAGCACTTATCA
CCACAAGAGGCGTTGTTAATTACCTAGTGTTGGCAGCGAGACAGTGAGAGCTGCAACTCC
GACAACCTTGAGGGGCAACTCCAATTTCCTCTGGCTTAACCATCGTACACAGGAAAGGTT
TAGGACCTTGACCAACTCTTACTACAGAGGGGCACAAGGGATCATCATGGTGTATGATGT
TACTCGCCGAGACACGTTCACAAATCTGTCTGACATATGGGACAAGGAAATTGACCTGTA
TTCGACCAACCAGGACCGCATAGGAAACAAAGTGGACAAGGCTCTTAATCTGTTCCAGCT
TACTAGTTTTCTCAGGAGCAAGAACATATATTTGATATG

Homology of Contig U35_38377 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None