barSeed - Barley Seed Development Database

Probe CUST_4429_PI390587928

Source Contig U35_37665

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4429_PI390587928	Hv_44K_v2	CTAGTTTTACCGACAACTATCTGATGAACCTGGACTACTGATCATACAGTGAAATATTTC	18	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.330	1.493	1.067	0.869	0.421	0.513
Raw	347.681	604.633	379.606	491.402	81.980	109.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_52907.1	938	8e-25	842 - 901	100	60 / 60	plus
Harvest35	U35_37665	527	3e-25	19 - 78	100	60 / 60	minus

Contig Sequence (527 bp)

>U35_37665 527 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGAAATATTTCACTGTATGATCAGTAGTCCAGGTTCATCAGAT
AGTTGTCGGTAAAACTAGTTACACATCTCTGCAAATGATATGCTGTCTGGGAGTGGTATT
GAACAGAGCAGCACATAATTTTATGCGGCATAGCAGAACAATGCCCAGCCTATCCAGCCA
TACTTTTCCCCCATAAACAATGAATTAACATGCTTACAGTTTGCATGATTCCGCCATGAA
AGGATGGACTAAAAGCAGATACAAAATTCATGTATTGTTATACTGTATATATGCTGCTAG
CCTGCTACTGTACTATTTATGTCTTCCTCTATGTTCACCCTTCTGGTGGTTACTTCCAGT
GTTATATTCGAATGTCCGCTTGCTACATTGTAGCTCCTCCGATATGTGCAGACAAAATCA
ATACCGTGCTTCTGCATTCTCGAATCGCTTCACTGTATTGAGTCGATATCGTAGAAAAAT
AAAGGCCTGGCACAAACGGCCTTACTCAGCCACGTGTCTTGATAGAT

Homology of Contig U35_37665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None