barSeed - Barley Seed Development Database

Probe CUST_4424_PI390587928

Source Contig U35_49640

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4424_PI390587928	Hv_44K_v2	TGTTTGTGGGATCAAATCTTATGATCTGGAGAAATAGCAACAGCCCTTTCAGTTCTTGCC	320	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251792.1	617	2e-24	558 - 617	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK250385.1	631	2e-24	572 - 631	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_45565.1	416	2e-24	162 - 221	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01156 ABC01157 ABC01164 ABC01166 ABC01167 ABC01177 ABC01179 ABC01184 ABC31601 ABC31617 ABC37479 ABC49951
MLOC	MLOC_45512.1	635	2e-24	183 - 242	100	60 / 60	plus	ABC01129 ABC01142 ABC01164
JLOC1	JLOC1_29579.1	383	8e-25	129 - 188	100	60 / 60	minus
JLOC1	JLOC1_29549.1	390	8e-25	183 - 242	100	60 / 60	plus
Harvest21	ABC51474	380	3e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC01164	634	3e-25	558 - 617	100	60 / 60	plus	ABC01164
Harvest21	ABC01129	621	1e-24	545 - 603	100	59 / 59	plus	ABC01129
Harvest35	U35_49640	380	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_36584	514	3e-25	135 - 194	100	60 / 60	minus
Harvest35	U35_13994	630	3e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_13981	634	1e-24	558 - 616	100	59 / 59	plus
Harvest35	U35_35417	422	4e-24	174 - 231	100	58 / 58	plus

Contig Sequence (380 bp)

>U35_49640 380 Hv_44K_v2
AGCGAAGCCACACACACACCAGAGCCCATCTCCCCCTCGCAGCAGCAGCAGCCGGAGCAT
CATCATCCATGGCCCCCAAGGCAGCCGAGAAGCTCGCCGGCGAGTCGGCCAAGCTGGCGC
GGTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTGCGCCTCGTCC
TCCCTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCA
CCTCTGCCTAAGTAGTTTCTTCCCGGTGCATCGATGTTGCTGTGTAATTGTTGGTTCAGA
CTCCGTTGTCATGTAACCTTTGTTTGTGGGATCAAATCTTATGATCTGGAGAAATAGCAA
CAGCCCTTTCAGTTCTTGCC

Homology of Contig U35_49640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None