barSeed - Barley Seed Development Database

Probe CUST_4418_PI390587928

Source Contig U35_49648

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4418_PI390587928	Hv_44K_v2	TGATGTGGTTATTCTGACATGGAAATCTAGCACAAGATTGGTGTTTAAACTTGCTGTAGT	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25886.2	2109	9e-22	1492 - 1546	100	55 / 55	plus	None
MLOC	MLOC_25886.1	2138	9e-22	1784 - 1838	100	55 / 55	plus	None
JLOC1	JLOC1_17634.2	1804	5e-22	1406 - 1460	100	55 / 55	plus
JLOC1	JLOC1_17634.1	2181	5e-22	1783 - 1837	100	55 / 55	plus
Harvest21	ABC51488	604	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_49648	604	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_49648 604 Hv_44K_v2
TGAAGATCATTGGTGCAGACAAGTGGTCTCTACAGCATAAATCAATTCCCGACAAGTTGC
AAAGCCTGTACAATGATGGCTACAAGTTGGTCATATTCACCAATGAGTCAAACATTGAGC
GCTGGAAGAATAAGCGGCAGCAAGCCGTTGACTCAAAAGTTGGACGCCTTTGACAACTTT
ATTGAGCGTGTTAAAGTCCCTATTCAGGTTTTCATTGCATGTGGTACAGGGAAAGGAAAA
GGCACACCAGATGATCTGTTTCGCAAACCAAATTCAGGAATGTGGTGGTTGATGGCAGAG
CATTTCAATTCTGGAATTGACATCGACATGGAACAATCTTTCTATGTTGGAGATGCTGCT
GGGAGAGAGAATGATCATAGTGATGCAGATATCAAATTCGCCAAGGCCATCGGTCTGAAG
TTTCACGTTCCTGAAGAATATTTCGGTCCCTAGGCGTTCATTGTGAGCAGCCATGCCAGG
TGGTGAATAAGATGGTTTACTGATTGCCATAGTTCGGTGCCTCATGTTCGGAACCTAAGA
ATGATGTGGTTATTCTGACATGGAAATCTAGCACAAGATTGGTGTTTAAACTTGCTGTAG
TCCC

Homology of Contig U35_49648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53560.1	459	3e-67	protein\|phosphoesterase, putative, expressed
Brachypodium v1_2	Bradi2g49180.1	460	2e-73
Arabidopsis v10	AT3G14890.1	694	4e-58	phosphoesterase \| chr3:5008751-5013060 FORWARD LENGTH=694