barSeed - Barley Seed Development Database

Probe CUST_4415_PI390587928

Source Contig U35_25691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4415_PI390587928	Hv_44K_v2	CTGTCATATGGTACCGAGTTGATTGGGATGCAGAGAGACTGGAATGAAGAATTGCAGTCA	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363507	4558	2e-24	1251 - 1310	100	60 / 60	plus	ABC05801
MLOC	MLOC_39392.1	1375	7e-23	543 - 602	98	59 / 60	plus	None
JLOC1	JLOC1_25680.2	1403	4e-23	523 - 582	98	59 / 60	plus
JLOC1	JLOC1_25680.1	1423	4e-23	543 - 602	98	59 / 60	plus
Harvest35	U35_25691	620	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_25691 620 Hv_44K_v2
TTAGAAGGAAGCAAACACTGCATCACAGGGAACTCCAAATCTTTCTATGTGAATGCTAGC
AATGGAAGTGTTTTGGATTCAAGACCTTTGAAACAATCTCACGAAGCCAGCACTTTAGTT
GGCCTGCTACAAAAAATTAGTGCCAAGTTTAAGAAAGGCTTTCGCGAAATATTGGACCGC
AAAGCATCGGCCCATCCTTTTGAGAATGTTCAGGCCTTGCTCCCAGTGACTTCTTGGTTG
GGAGCTCACCCCGTGCCAGAACATAGAAGGGACTCAGCCAGGGCTGAGGATTCTGTTGTG
CTGTCATATGGTACCGAGTTGATTGGGATGCAGAGAGACTGGAATGAAGAATTGCAGTCA
TGCCGAGAGTTTCCTCATGCCAATCCTCAAGAAAGGATATTGCGAGGCAGAGCACTCTAT
AAAGTGACATGCGATTTTGTTGATGCTGCTGTAAAAGGAGCAGTCGGTGTCATCAATAGA
TGTATACCTCCAATCAATCCAACTGATCCAGAGTGTTTTCATATGTATGTCCACAACAAC
ANTTTCTTCAGTTTTGCTGTTGACTCTGACTATGAGCAAATCTCAAAGGACCAAAAGCCA
GATTGCCAAATGGTTCTAGC

Homology of Contig U35_25691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48620.2	1427	5e-124	protein\|tetratricopeptide repeat, putative, expressed
Brachypodium v1_2	Bradi3g53420.1	1384	2e-125
Arabidopsis v10	AT3G52140.4	1419	3e-98	tetratricopeptide repeat (TPR)-containing protein \| chr3:19333232-19341295 FORWARD LENGTH=1419