- Probe CUST_4404_PI390587928
- Source Contig U35_37674
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4404_PI390587928 | Hv_44K_v2 | TGGTGAGTGATGTACAACATCCTGTAAATATTGACACAAGTAGCAAGTATATGTAACATC | 276 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.569 | 3.147 | 1.444 | 0.588 | 0.152 | 0.215 |
| Raw | 704.487 | 1307.319 | 528.064 | 349.635 | 29.981 | 46.593 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21828.1 | 853 | 2e-24 | 699 - 758 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_15130.1 | 1000 | 8e-25 | 691 - 750 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37674 | 375 | 3e-25 | 277 - 336 | 100 | 60 / 60 | plus |
Contig Sequence (375 bp)
>U35_37674 375 Hv_44K_v2 AAAGGCAACATCATATTCACTGGACCCTGAAAACAGTAGTTCGTGTGAGACAAGTTCTAT CTCAACTTCAGATGATTCGGCATCTGAATCATCAATTGATGATAGCGGAATTAGATAGAT GAAATTGCATGGTCTGACTGCTATTTCAGGACTCGAGATTATATATTCTTGATTCTTTGC TATAATTTGGAGAGCAGATGCATTCAAGAATGAAGGGGAGAATTGTGAAAGAGTATTGTT TGTTGCATTTGAGGTTTTGTAGTGCGCAAATTGATTTGGTGAGTGATGTACAACATCCTG TAAATATTGACACAAGTAGCAAGTATATGTAACATCATAGTGGCAGTTTTTTTAATTTAA AAAAAAAAAAAAAAA
Homology of Contig U35_37674 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |