barSeed - Barley Seed Development Database

Probe CUST_4403_PI390587928

Source Contig U35_37675

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4403_PI390587928	Hv_44K_v2	ACCGGGTAGTGATTGCTTACCAAATCAACATTATTGACTGAACTAATAAATGGCATATTC	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22184.3	2727	2e-24	605 - 664	100	60 / 60	minus	ABC15227 ABC33324
Harvest35	U35_37675	613	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_37675 613 Hv_44K_v2
CACATGCATTTTTCTAGATTATTCTGTAGTTCCATAAATCATGAAAAATGACACCAAAGC
TCTTTTGCAGGACTCAAAGAGGTATAGTTCTGGAAGGGGTGCTCATGTAAACCTTAGAAG
GGCAGAAAAGGCACGGATTTTGGTCACCAAAATTCCAGGTAGGCTTTAATTCCAATGCTG
GGGAACTATTCGTGTATTTCAGTTTAGTTCAAACGCATGACCCATATCTTCCTCAGCTAT
GATGGACAACCTGATAAACCGTACCTTCGCTTGGGAAAATGCAAGAAATAAGCCATTCCT
ATATGATGGGGTATGCCTATAATCTGATCAGCAGTGTAAGCATTTATCATCTGTTTCTTC
AATTGATTGAGTCATATATATGATTTGACAGGGACGACTAGTATCTGTTCTAGAAGAGTA
CAGACTTGACAGAAAACAAAAAGAGGAGGAAAAAAGGCGATACCGGGTAGTGATTGCTTA
CCAAATCAACATTATTGACTGAACTAATAAATGGCATATTCTGGTCTAAACATCACTTTT
TTATATTGCAGGATCAGAAGAAATTGGAGAGCATCCTGCTTGCAGAGAAAGAAGCGATTN
TTGGCTCCAAACC

Homology of Contig U35_37675 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None