barSeed - Barley Seed Development Database

Probe CUST_4392_PI390587928

Source Contig U35_49657

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4392_PI390587928	Hv_44K_v2	TTCTTCTTCTTTTCGAGTAAACCCTCCCTGAATTGGTGATCTGATCGGTAGGTGTTCGAG	318	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55819.3	1078	2e-24	432 - 491	100	60 / 60	plus	ABC10314
MLOC	MLOC_55820.3	5267	2e-24	1885 - 1944	100	60 / 60	plus	ABC10314
MLOC	MLOC_55819.1	1074	2e-24	637 - 696	100	60 / 60	plus	ABC10314
Harvest21	ABC51504	443	3e-25	319 - 378	100	60 / 60	plus
Harvest35	U35_49657	443	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_49657 443 Hv_44K_v2
AATGGCGTTCAGAAGCCCCAGCTGCCATCCTCATCTAGCTTCTTCCTCCGTGGTCACCTC
CGGCCCGAGGTTCGGCGCAAGGAAGCCGGCGGCAGCCCTGAGCTTCAGGAGTTCTGCATC
CCATGGCTGCAACTCATCGTCCCCACACCTCTGCTCTTCTGCAGCAACCGGCAACAAGGT
ATACTACTATAAATCATCTTGCACTGGTCCGTGCACACTTGTATAATCCATGTGTATGGT
TGATCGATCCAACGAGATATCTCGGTTCCCTCAATTCCTCTCTGAATTGTTCTTCTTTTC
GAGTAAGCCCTCTCTGAATTCTTCTTCTTTTCGAGTAAACCCTCCCTGAATTGGTGATCT
GATCGGTAGGTGTTCGAGGACCAGGTGAGAGGGATCGTGTGCTACAGGGATGACAAGGGG
GAGCTCGTCTGCGAGGGCTATGA

Homology of Contig U35_49657 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None