- Probe CUST_4391_PI390587928
- Source Contig U35_49658
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4391_PI390587928 | Hv_44K_v2 | GTTTTGGTTACTGTGAAGCAGCCGGCCAGGCTATTGCTACTCTGAATAAACTATTAGCTC | 460 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69140.1 | 2103 | 2e-24 | 1804 - 1863 | 100 | 60 / 60 | plus | ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640 |
| JLOC1 | JLOC1_45803.2 | 1855 | 8e-25 | 1534 - 1593 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45803.1 | 2127 | 8e-25 | 1806 - 1865 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51505 | 520 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34629 | 613 | 3e-25 | 158 - 217 | 100 | 60 / 60 | minus | ABC34629 |
| Harvest21 | ABC01000 | 462 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus | ABC01000 |
| Harvest21 | ABC00851 | 2008 | 3e-25 | 159 - 218 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00309 | 625 | 3e-25 | 115 - 174 | 100 | 60 / 60 | minus | ABC00309 |
| Harvest21 | ABC00275 | 567 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | ABC00275 |
| Harvest21 | ABC00092 | 2014 | 3e-25 | 1788 - 1847 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37614 | 454 | 1e-24 | 125 - 183 | 100 | 59 / 59 | minus | ABC37614 |
| Harvest21 | ABC37572 | 435 | 5e-23 | 104 - 162 | 98 | 58 / 59 | minus | ABC37572 |
| Harvest21 | ABC00368 | 432 | 2e-21 | 104 - 162 | 97 | 57 / 59 | minus | |
| Harvest35 | U35_49658 | 520 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38723 | 613 | 3e-25 | 158 - 217 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_13829 | 2028 | 3e-25 | 1800 - 1859 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13704 | 793 | 3e-25 | 585 - 644 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48831 | 463 | 5e-23 | 198 - 256 | 98 | 58 / 59 | minus |
Contig Sequence (520 bp)
>U35_49658 520 Hv_44K_v2 ATTCTTGAGATCGGAACCGGAACAAGCGGGCGCGCTCGGGAAGGGGTTACCATACCAATT TTTCCCAGGAACCCTTAGTGAATGTTCTAATGGAGTCAAAGGGTGGCAAAAAGTCTAGCA GTAGTAGTTCCCTGATGTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTTCGACCAG CTGGAGGCGCAAAGAAGTTTTCTGCTGCATACTCAAACTGCGCGAAGAAGCCATCCTGAT ATCGTTTTTGGCTTTCCCCTTCCCGTAGTTTAGGATTTTTATGCAATTTTATTCTGACTC TTTTCTCCCACCCTCTGGTCAAGGAAGGCAAGCTTGCCAACCTGCTCGCATGGCGGGCGG AGGAGGATTCTCTGGAGGAGGGCGGNGTGCTGTGCGAGTGATAAGATGATTTTTGCTGTC GCTGTTCCGTCTGTGGAATTCGTTCTGACTTCCGTTTGTCGTTTTGGTTACTGTGAAGCA GCCGGCCAGGCTATTGCTACTCTGAATAAACTATTAGCTC
Homology of Contig U35_49658 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |