barSeed - Barley Seed Development Database

Probe CUST_4386_PI390587928

Source Contig U35_37685

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4386_PI390587928	Hv_44K_v2	TTTCTTGGCTAAACTTTGCCAACCATGTGATGTAATGCATCATACACTCCTTAATGCAAA	14	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.715	1.641	0.595	0.476	1.090	0.971
Raw	10.994	15.503	4.278	3.279	2.896	2.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66855.1	1041	3e-21	326 - 382	98	56 / 57	minus	ABC33339
MLOC	MLOC_66855.2	1013	3e-21	320 - 376	98	56 / 57	minus	ABC33339
MLOC	MLOC_66855.3	1758	3e-21	320 - 376	98	56 / 57	minus	ABC33339
JLOC1	JLOC1_44101.1	1722	2e-21	1256 - 1312	98	56 / 57	plus
Harvest21	ABC33339	440	3e-25	15 - 74	100	60 / 60	minus	ABC33339
Harvest21	ABC34470	736	6e-22	609 - 665	98	56 / 57	plus
Harvest35	U35_37685	440	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_38481	736	6e-22	609 - 665	98	56 / 57	plus

Contig Sequence (440 bp)

>U35_37685 440 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCATTAAGGAGTGTATGATGCATTACATCACATGGTTGGCAAA
GTTTAGCCAAGAAATGATCCTTTTTTACATGACTTGGTGATCCATATTGAAGAGGCATAT
ATATTTGCTTGGTGGCACCTATGATGTCAACACCTGTTGGTTCCATTAATTCCAAGGTGC
GTCGATCTTCAAATTCTTAAGTTCCTCCAACTGCCTACTTGTTTCCTTGTGAGTCTCTAA
AAGCTCATTATACTTCAGTTGCAAATCCAACTTCTCGGCTTTGAGCTTTTCATAATCGGA
AATCGACGGACCGCCCAATTTCTGCTGAACAAACTCGACTGCAGATGATGGCTTGTCATT
CTCCTCATACAAAGAAACAAGGGCTTTGGTGAGAGTATTGAGCACACCGTTGGACTCAAG
GTACTTACTGAAACCTTCTT

Homology of Contig U35_37685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None