barSeed - Barley Seed Development Database

Probe CUST_437_PI390587928

Source Contig U35_40693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_437_PI390587928	Hv_44K_v2	TATGCAGTTTTGGTCGACATTTACGGTCAGTATGGACATTTTCGCGATGCCCAGGAATGT	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357767	2119	2e-24	1060 - 1119	100	60 / 60	plus	ABC21322
MLOC	AK358415	2500	2e-24	1060 - 1119	100	60 / 60	plus	ABC21322
MLOC	MLOC_2650.1	1322	2e-24	672 - 731	100	60 / 60	minus	None
JLOC1	JLOC1_1580.1	935	8e-25	282 - 341	100	60 / 60	minus
Harvest35	U35_40693	547	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_40693 547 Hv_44K_v2
GGGTACAGCACGCTGGTGCGGCTTTACAGGGACAGTGGCATGTGGAAGAAGGCCACCGAC
CTCATCATGGAGATGCAGGAGGTCGGGGTGGAGCTCGACGTTAAGATCTACAACGGCTTG
ATCGATACGTTCGGCAAGTACGGGCAGCTCGCCGATGCGCGCAAGATGTTTGAGAAAATG
CGTGGGCAGGGGATCAAGCCAGATATTGAAACGTGGAACGCTTTGATTCGATGGCACTGT
CGGGTTGGGAACATGAAGCGTGCCCTGCGATTCCTTGCTGCTATGCAGGAGGAAGGTATG
TACCCAGACCCAAAGATCTTCATTACGATCATCAACAGGTTGGGGGAGCAAGGGAAGTGG
GATGAGCTCAAAGAGCTGTTTGATAAAATGAGGAATCGAGGGTTCAAGGAGAGTGGTGCA
ATATATGCAGTTTTGGTCGACATTTACGGTCAGTATGGACATTTTCGCGATGCCCAGGAA
TGTGTAGCTGCTCTTAAGGCTGNAAACCTGCAGCTTTCTCCTAGCATCTTCTGTGTCCTG
GCGAACG

Homology of Contig U35_40693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49670.2	493	1e-113	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi1g34857.1	508	1e-115
Arabidopsis v10	None