barSeed - Barley Seed Development Database

Probe CUST_4375_PI390587928

Source Contig U35_49668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4375_PI390587928	Hv_44K_v2	ACAACACTGCCCGTGGTGTGCAGAAGGTTCTTCAGAACTACAAGAATCTTCAGGATATCA	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359072	2141	2e-24	1433 - 1492	100	60 / 60	plus	ABC01956 ABC01958 ABC49606 ABC49950
MLOC	MLOC_75792.1	1844	2e-24	1271 - 1330	100	60 / 60	plus	ABC01956 ABC01958 ABC49606 ABC49950
MLOC	MLOC_75792.2	1718	2e-24	1184 - 1243	100	60 / 60	plus	ABC01956 ABC01958 ABC49606 ABC49950
JLOC1	JLOC1_50553.1	2124	8e-25	1186 - 1245	100	60 / 60	plus
Harvest21	ABC51519	487	3e-25	428 - 487	100	60 / 60	plus
Harvest21	ABC01959	943	3e-25	511 - 570	100	60 / 60	minus
Harvest21	ABC01957	2134	3e-25	1393 - 1452	100	60 / 60	plus
Harvest21	ABC01960	605	4e-24	539 - 598	98	59 / 60	minus
Harvest35	U35_49668	487	3e-25	428 - 487	100	60 / 60	plus
Harvest35	U35_14758	2174	3e-25	1429 - 1488	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_49668 487 Hv_44K_v2
CGTGAAGGTAATGACCTGTACCGGGAAATGATTGAAAGTGGTGTCATCAAGCTTGATGAT
AAGCAGAGCGAAAGCAAGTGCGCTCTTGTCTACGGGCAGATGAACGAGCCCCCGGGTGCT
CGTGCTCGTGTTGGTCTGACTGGTTTAACTGTTGCTGAGCATTTCCGTGATGCTGAAGGA
CAAGATGTGCTTCTGTTTATTGACAACATTTTCCGTTTCACCCAGGCAAACTCTGAGGTG
TCTGCTCTCCTTGGACGTATTCCATCTGCTGTGGGGTACCAACCAACTCCTGCTACCACC
TTTGCCCATCTTGACGCTACTACTGTGTTGTCACGATCGATTTCTGAGCTGGGCATTTAC
CCTGCTGTCGATCCTTTGGACTCGACATCAAGAATGCTTTCTCCCCACGTTCTGGGTATG
GATCACTACAACACTGCCCGTGGTGTGCAGAAGGTTCTTCAGAACTACAAGAATCTTCAG
GATATCA

Homology of Contig U35_49668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g47980.1	553	6e-98	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi2g46790.1	552	1e-97
Arabidopsis v10	AT5G08690.1	556	4e-96	ATP synthase alpha/beta family protein \| chr5:2825739-2828352 FORWARD LENGTH=556