barSeed - Barley Seed Development Database

Probe CUST_4370_PI390587928

Source Contig U35_49670

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4370_PI390587928	Hv_44K_v2	ATTGTAGTAAGCCTGAATTTTCCACAACTGTCTCATAGAATTTGCCTCTCTTTTTCAGCT	275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21666.1	2390	2e-24	1427 - 1486	100	60 / 60	plus	ABC07814 ABC43725
Harvest21	ABC51526	699	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_49670	699	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (699 bp)

>U35_49670 699 Hv_44K_v2
AGTATTACTTATAGAGTTCCTTGGTTTGGCTTCTTATTGGAGGGTGGCTGTTGAGCATCT
GTTGGAAAGGCAGTTCATTTTTGCTAGATCAAAACTTAATAATTAAACCTCAAATCAAAT
CGTTTGTAGTGTATCTCATCTATAGGAGGCCTGGAGAGTTGTTAACTCAAGGAAGTGGAG
TCGCAACCACTTTTCCTCTGCAGGAAGTGTATGCAAGGCTGATTTCTGAAGGATAAACTT
CATCTACCTGTCTATCAATTCTTTTTCCTAACACGATTGTAGTAAGCCTGAATTTTCCAC
AACTGTCTCATAGAATTTGCCTCTCTTTTTCAGCTCGAATGTATTTCCTGTGGTTACACA
TGGTTTTCGTCAAGAGATGCCATCTCATCGCTGACGGTCGATACTCCAAGTTCTGGTGGG
AATGTCGGTACCGCTCCCTGNGCGACAGCAAAGTTTGATGTCCTTCAGAAGCAGCTAGTG
AGCCCTCGGGATCAGCCAGACAATAAGGCAAGTGCTGATGCTCTCCAGAAGAACGCGGTG
GCATCCATGCCTAAACTTGAGAAACAGAAATCATTCATCAAACCGAAGCCAGAGGAACCC
TCTGCACCCACACTGGAGAAACAGAGGGCGTTCACCAAGCCAAAGCCGGAGGAACCCTCT
GCACCTTCAGCTAGTCGTGAGTGAATGATCATGGGCATT

Homology of Contig U35_49670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g40147.1	676	6e-52
Arabidopsis v10	None