barSeed - Barley Seed Development Database

Probe CUST_4366_PI390587928

Source Contig U35_49675

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4366_PI390587928	Hv_44K_v2	CGATATAAAACACTAACAGTAATAGAATCAACAGCCGTTTTTTGCAGGCAGTCATGGTAA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362864	2509	3e-22	990 - 1048	98	58 / 59	plus	ABC01962 ABC01972 ABC44247
MLOC	MLOC_6528.1	3390	3e-22	3157 - 3215	98	58 / 59	plus	None
JLOC1	JLOC1_4257.1	1010	1e-22	763 - 821	98	58 / 59	plus
Harvest21	ABC51532	318	3e-25	1 - 60	100	60 / 60	minus
Harvest21	ABC15428	1074	5e-23	942 - 1000	98	58 / 59	plus
Harvest35	U35_49675	318	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_7301	1074	5e-23	942 - 1000	98	58 / 59	plus

Contig Sequence (318 bp)

>U35_49675 318 Hv_44K_v2
TTACCATGACTGCCTGCAAAAAACGGCTGTTGATTCTATTACTGTTAGTGTTTTATATCG
GTTGCAACCCCCTGGGTTAATTTTGGGGCTCCAAAAGCACGCCCAAGACACAGCTACCCA
TGCATCATCAATGATAAAACAAGGGCCCGGTATACTTTTCAAGGTCAATACGGATTAGGA
TGAGCAGCGTGCAGCCTTCTTTACGGCAGAGACATCGGCTTTGGACCCTACGTTGATGGT
CCTTGAGCTCCTTGAGCCACCTGTGCACATTCTGGAAGGTGACATGACGTGTCACATGAT
ACACAACAAGCGCACCCA

Homology of Contig U35_49675 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None