- Probe CUST_4363_PI390587928
- Source Contig U35_49679
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4363_PI390587928 | Hv_44K_v2 | AAGATTCAGAAGGTTGCGGTATATCCTGGGCATGTGTTGGCTCTTTATATGTCCAAGCCA | 476 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249349.1 | 3364 | 2e-24 | 2188 - 2247 | 100 | 60 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.6 | 3504 | 2e-24 | 1115 - 1174 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.1 | 3472 | 2e-24 | 1153 - 1212 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.3 | 3490 | 2e-24 | 1152 - 1211 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.4 | 3488 | 2e-24 | 1152 - 1211 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.2 | 3466 | 2e-24 | 1153 - 1212 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_81745.5 | 3573 | 2e-24 | 1152 - 1211 | 100 | 60 / 60 | minus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.6 | 3029 | 3e-21 | 1743 - 1802 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.5 | 2830 | 3e-21 | 1812 - 1871 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.3 | 2799 | 3e-21 | 1781 - 1840 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.2 | 2944 | 3e-21 | 2012 - 2071 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.7 | 3044 | 3e-21 | 1743 - 1802 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.4 | 3565 | 3e-21 | 2264 - 2323 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| MLOC | MLOC_5021.1 | 3221 | 3e-21 | 1920 - 1979 | 97 | 58 / 60 | plus | ABC08301 ABC08302 |
| JLOC1 | JLOC1_54377.4 | 4289 | 8e-25 | 3071 - 3130 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_54377.3 | 4292 | 8e-25 | 3074 - 3133 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_54377.2 | 4231 | 8e-25 | 3013 - 3072 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_54377.1 | 4227 | 8e-25 | 3009 - 3068 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3201.4 | 2897 | 2e-21 | 1680 - 1739 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_3201.3 | 3533 | 2e-21 | 2230 - 2289 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_3201.2 | 2757 | 2e-21 | 1793 - 1852 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_3201.1 | 3010 | 2e-21 | 1793 - 1852 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC51537 | 568 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08302 | 1657 | 6e-22 | 290 - 349 | 97 | 58 / 60 | plus | ABC08302 |
| Harvest35 | U35_49679 | 568 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16928 | 1655 | 6e-22 | 290 - 349 | 97 | 58 / 60 | plus |
Contig Sequence (568 bp)
>U35_49679 568 Hv_44K_v2 TCCATAAGGTAATAGCAGCAGGTGTTGCAGTTGGTGTTGCTCTGCATGCAGGTGCTCATC TCACATGTGATTTTCCTCTCTTGCTCCATGCAAGTGATGCAAAATATGAACCAATGAAGC CTTTCTTTGGGGAGAAAAGGCCACCAAACTACTGGTGGTTTGTAAAAGGAACCGCAGGGT GGACCGGTATTGTCATGGTAGTGCTCATGTCAATAGCTTTTGTATTAGCCCAGCCATGGT TCCGACGTAACAAGCTCAAGGACTCTAATCCACTCAAGAAGATGACTGGTTTCAATGCCT TTTGGTTTACACACCACCTATTTGCTATTGTGTATGCACTGCTCATCGTCCATGGAACAA GTTTGTATCTAACCAAGGAGTGGTACAAGAAATCGACATGGATGTACATTGCTTATCCTG TCTTCTTATATTCATGCGAGCGCATTGTTCGGTTATTTAGGAGCCATGATGCAGTTAAGA TTCAGAAGGTTGCGGTATATCCTGGGCATGTGTTGGCTCTTTATATGTCCAAGCCACCTG GTTTTAGATACCGGAGTGGGCAGTACAT
Homology of Contig U35_49679 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g25820.2 | 881 | 8e-103 | protein|respiratory burst oxidase, putative, expressed |
| Brachypodium v1_2 | Bradi2g12790.2 | 902 | 5e-115 | |
| Arabidopsis v10 | AT1G09090.2 | 843 | 8e-77 | | Symbols: ATRBOHB, RBOHB | respiratory burst oxidase homolog B | chr1:2932743-2936495 FORWARD LENGTH=843 |