barSeed - Barley Seed Development Database

Probe CUST_4362_PI390587928

Source Contig U35_49680

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4362_PI390587928	Hv_44K_v2	TCCCTAAATATACCATAATCATGTGCTGATGTTTTGAGTTTTCAGATTGTCCTGGAGCCC	352	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368181	2040	2e-24	902 - 961	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_26272.1	493	2e-24	292 - 351	100	60 / 60	plus	None
MLOC	MLOC_49000.1	513	3e-21	217 - 276	97	58 / 60	minus	ABC16261
JLOC1	JLOC1_17843.1	495	8e-25	290 - 349	100	60 / 60	plus
JLOC1	JLOC1_31407.1	531	2e-21	256 - 315	97	58 / 60	minus
Harvest21	ABC51539	498	3e-25	353 - 412	100	60 / 60	plus
Harvest35	U35_49680	498	3e-25	353 - 412	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_49680 498 Hv_44K_v2
GTTGCATGCTTTCTGAATGTTGGTGGTAATCTGAACGGTGAGTGTTACTCATAATCGTAG
TATCTTCAGATGCTAAATAATTGAGCACTGTATGTACTCTGTATACCATTTGTTACTTCA
AATCTGTTGTTGGGTGGAGAAGAAACCTTCCTTGGAATCTTTCCATTAATAAGTATCGTA
CTTTTCTCAGTTACCTGGACAAATTGTTTGGTTATGAATGGCATACACAAACACAACAAT
CGCTATATATAGCAGTTCATTATGTTGAAGGGTCCTTGTTTGTCGCCTCGATGCCTTGGC
AACTGATTAGTAAAAGCTATATGTCAACCTGAGAGGCTGACATTGGCACTTTTCCCTAAA
TATACCATAATCATGTGCTGATGTTTTGAGTTTTCAGATTGTCCTGGAGCCCCTTTGCTA
CCATTGCTCTTCATAACTATGAACATGGCCTTCAACATTTCTGTTCTAAATCTGGTGAAG
ATGTCATTTGGGTTTTGT

Homology of Contig U35_49680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None