barSeed - Barley Seed Development Database

Probe CUST_4358_PI390587928

Source Contig U35_49684

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4358_PI390587928	Hv_44K_v2	TGCAAATATTACTCTATACCCGTCTGCTATGAACAGTGTCATGTCCCCCATTTGAAAGAT	514	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363455	1735	2e-24	730 - 789	100	60 / 60	plus	ABC06984 ABC40942
MLOC	AK372627	1617	2e-24	782 - 841	100	60 / 60	plus	ABC06984 ABC40942
MLOC	MLOC_56159.9	1632	2e-24	679 - 738	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.10	1532	2e-24	579 - 638	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.3	1705	2e-24	813 - 872	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.7	1969	2e-24	1035 - 1094	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.8	2185	2e-24	1251 - 1310	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.1	1522	2e-24	603 - 662	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.2	1631	2e-24	712 - 771	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.4	2146	2e-24	1188 - 1247	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.5	2152	2e-24	1194 - 1253	100	60 / 60	minus	ABC06984 ABC40942
MLOC	MLOC_56159.6	1932	2e-24	974 - 1033	100	60 / 60	minus	ABC06984 ABC40942
JLOC1	JLOC1_36301.3	1742	8e-25	900 - 959	100	60 / 60	plus
JLOC1	JLOC1_36301.2	1671	8e-25	900 - 959	100	60 / 60	plus
JLOC1	JLOC1_36301.1	1581	8e-25	798 - 857	100	60 / 60	plus
Harvest21	ABC51543	574	3e-25	515 - 574	100	60 / 60	plus
Harvest21	ABC06984	1745	3e-25	785 - 844	100	60 / 60	plus	ABC06984
Harvest35	U35_49684	574	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_2923	1838	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_49684 574 Hv_44K_v2
CGGCCGCCGTCCGTCGGCGCCGCGTCCCTGCAGGTAGACCGGAGAAGGTAGGGTGGTCCG
CTGCGATGGCGCGCGTGTACGTCGGGAGCCTGGATCCTGCCGTGACGGCCCGGGAGCTCG
AGGACGAGTTCCGCGTGTTCGGGGTTCTCCAGCAGTGGTCGTGGTGGTCGTGATCGATCT
GGTGGATCTGAGATGAAGTGTTATGAATGTGGTGAGTCTGGTCACTTTGCCCGTGAATGC
CGTCTGAGGATTGGTTCTGGGGGCCTAGGCAGTGGAAGGCGTCGCAGCAGGAGTCGAAGC
CGTAGCCGCAGTCGGAGCCCTAGATACCGCAGGAGTCCAAGCTACAGCAGAAGAAGCTAC
AGCCGCTCTCCAAGGCGTCGTAGTGTGTCACCGGCTCGTGGGCGCAGTGTTAGCAGGTCA
CCAGTCCGTGGACGTGACGAATCTCCCGCCTATAGCAATGGGTATCGCCGTAGCAGGAGC
TAGAGCTGTATGTGATGTCTGGAGAGTGTTCTATTGCAAATATTACTCTATACCCGTCTG
CTATGAACAGTGTCATGTCCCCCATTTGAAAGAT

Homology of Contig U35_49684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None