- Probe CUST_4355_PI390587928
- Source Contig U35_49687
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4355_PI390587928 | Hv_44K_v2 | TCCCATCCTTTGAGAAAAAACCCAAAGGCATTCAACTTGGTATGGCAAGAATGCCAATGC | 423 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.803 | 1.362 | 0.891 | 1.039 | 0.484 | 0.731 |
| Raw | 369.807 | 427.200 | 252.211 | 491.350 | 74.017 | 121.139 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251578.1 | 1927 | 2e-24 | 1647 - 1706 | 100 | 60 / 60 | plus | None |
| MLOC | AK355408 | 1500 | 2e-24 | 1438 - 1497 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_57845.1 | 1201 | 2e-24 | 109 - 168 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_37564.1 | 1206 | 8e-25 | 1033 - 1092 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51547 | 486 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49687 | 486 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus |
Contig Sequence (486 bp)
>U35_49687 486 Hv_44K_v2 AACCTGTGGAGCCCTTGCATGGATTATGATGTGGACCCCATCTTTGGACCCAACATCAGC AGCTCGATGAATCTGAGCGAGTGGTTCAACGATCCCGCCTTCGAGAGCAACATCGGGTAC ATGTTCGAAGGATGTTCGGACGTCGATGACTGCAGCACCAGGCATGGCGCAGGTCTGTCA GCGTTGGGTTTTCTCAAGGAAGGCGACGATAAGCTGAAGGATGTTTCAGACATGGAGGCA GAAATAACTCCTCAGGCAAACGATGTCTCCTGCCCTCCAAAAATGATCACCGTGTGTAAT TGAGCATCTCTGTGCTCTCATGTCCAAGGAAGGTTTCAGGTTTTCATGTTGGTTATACCT CTTAGCTAGCTTCTTGTAGGCTGTCTGTCTGTCTGATCAGGTCAGAGAAATTCATGTGTT CATTCCCATCCTTTGAGAAAAAACCCAAAGGCATTCAACTTGGTATGGCAAGAATGCCAA TGCTCC
Homology of Contig U35_49687 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |