barSeed - Barley Seed Development Database

Probe CUST_4353_PI390587928

Source Contig U35_49692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4353_PI390587928	Hv_44K_v2	CACCGTGACATCAAAGCCAGCAACATCCTTCTAGACAGATGCTTGGAGCCGCGCGTGTCT	287	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57599.8	1615	2e-24	955 - 1014	100	60 / 60	plus	None
MLOC	MLOC_57599.7	1605	2e-24	656 - 715	100	60 / 60	minus	None
MLOC	MLOC_57599.4	2296	2e-24	731 - 790	100	60 / 60	minus	None
MLOC	MLOC_57599.6	1972	2e-24	722 - 781	100	60 / 60	minus	None
MLOC	MLOC_57599.3	2559	2e-24	731 - 790	100	60 / 60	minus	None
MLOC	MLOC_57599.1	2280	2e-24	755 - 814	100	60 / 60	minus	None
MLOC	MLOC_57599.2	2226	2e-24	744 - 803	100	60 / 60	minus	None
MLOC	MLOC_57599.5	2293	2e-24	731 - 790	100	60 / 60	minus	None
JLOC1	JLOC1_37353.1	2312	8e-25	1437 - 1496	100	60 / 60	plus
Harvest21	ABC51552	347	3e-25	288 - 347	100	60 / 60	plus
Harvest35	U35_49692	347	3e-25	288 - 347	100	60 / 60	plus

Contig Sequence (347 bp)

>U35_49692 347 Hv_44K_v2
AGAGGATTGACCTCAACCGGGAGAGGCGAGAAAAGACTTTCGAGAAGGAGCTCGAGATCC
TGGGCAGCATTAGGCATATCAACCTTGTCAATCTGCGAGGATACTGCCGGCTCTCCACGG
CCAAACTGCTCATATATGACTTCATGGAGCTGGGCAGCTTGGACAGCTACCTCCATGGTG
ATGCGCAGGAGGATCAGCCATTGAACTGGAATGCACGTATGAAGATCGCCCTGGGCTCCG
CCCGTGGTTTGGCGTATCTGCACCACGACTGGCTCGCCGGGATTGTCCACCGTGACATCA
AAGCCAGCAACATCCTTCTAGACAGATGCTTGGAGCCGCGCGTGTCT

Homology of Contig U35_49692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g44090.1	629	1e-63	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi4g00550.1	613	3e-67
Arabidopsis v10	None