barSeed - Barley Seed Development Database

Probe CUST_4351_PI390587928

Source Contig U35_49694

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4351_PI390587928	Hv_44K_v2	TTTTTATTTTTGACGGGGACGCTGTAGCTCTTTTTTATTTTTGACGGGGACGCTGTAGCT	255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376459	1746	2e-24	1559 - 1618	100	60 / 60	plus	ABC49967
Harvest21	ABC51554	415	3e-25	256 - 315	100	60 / 60	plus
Harvest35	U35_49694	415	3e-25	256 - 315	100	60 / 60	plus

Contig Sequence (415 bp)

>U35_49694 415 Hv_44K_v2
TCCAATCTTCTCAAGTACTCGAGGCATTTTCTTTATTCGAGTCCTGCTCAGCCCCTTGGA
CCAGAAGACCTTACATGGAGAATGATTGCTGGCAAGCTGGTGAACATCAAGCTGCATATT
CAGCGGTCGCGGCGCGTGGTCAGAGAATCAAGAAGCGTATGCACATGTGAGTGTAGGGTC
GGGAATACTACGAGGATGCTCTGAACCAGCTTTTTCTTTGTAGTATTTTTCCAGTTCCCG
TAACGCTGTAGCTCTTTTTTATTTTTGACGGGGACGCTGTAGCTCTTTTTTATTTTTGAC
GGGGACGCTGTAGCTCTTCTTTACAAGTCATTGATATGAGTTTGCCCCACTGTTACACTC
GTTTGTAAATTGCACTACTTGAAAAATCTAGCGTTAATTTGTAACTGATGCTCCA

Homology of Contig U35_49694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None