barSeed - Barley Seed Development Database

Probe CUST_4341_PI390587928

Source Contig U35_8607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4341_PI390587928	Hv_44K_v2	GTGTGTTGAGTAGCATGTTTGTTTAACAACCAGTGTATACTATTACATGTCCTCATTAAG	523	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.222	1.254	1.946	2.532	0.959	0.819
Raw	2.572	47.771	61.127	142.744	16.481	15.699

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18399	373	3e-25	258 - 317	100	60 / 60	plus	ABC18399
Harvest21	ABC18400	582	1e-23	518 - 577	98	59 / 60	plus
Harvest35	U35_8607	639	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_8607 639 Hv_44K_v2
TAGCTCTGCCCTTGCTTGCTCGCTCACTCACTCACTCCTCTCTACTTGTGCACGCAGTCT
CGAGCCATGATGCTGAAGCCTTCGCTTGCTCTCACGCTTGTGGTCATCTTCTCCCTCGAC
ATCCCATCGTTGGAGGCCAGACCACTCGGACTTGAGGCGCATCCCTCTCCGCTGCCTCGC
CCAGGTACGGCAAACGAGGCCGGAGAGGCTCTGGTGAGCTACGAACCGGGATGGAGGAGC
GGCGACGACGGCGATGAGGGTGTCGCCCCAGGAACAGGAACGCCGACGGCTGATGAGTTG
AGCCGGTCAGCACCGGCGGCGGCTCAGGAGGGCAACCCGACGCGCTATCGTCAGCCAGCT
GAGCGGTGGGGTCCCGTGCCAGGGGTTGGTGGGTCGCGAAAGCCGTTTCGTCCGCCGGCG
CCTGCTGTGCCGAGGCCGCCGCACTGGCGCTCTTCAGGTGATCCTGGAGAGGGAGAGGGA
GAGGGTAGAAGCACGAGGCCGTTCGATGTTTTCCACCTGCTTCGTGTGTTGAGTAGCATG
TTTGTTTAACAACCAGTGTATACTATTACATGTCCTCATTAAGTTTATTTTAAATAATTT
GTGTACAAATTTTGTATTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None